Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1326 ATGGCATTCAATCCAAAACAACAAAAACAAAAACAAAAACTAGAAAGAGAAGAAGAAACAAGAGAAGGTGAAGGAGAAGAAAGAGGGAGTACTCCACTACGGTACATCCCACTGGATAATCTCTACTCCGCCACGTCACCTTGTCGTGTCACAGTCATGTCTAAGAAAGTTAAAGCTCGAAAACTTCCTCACCAAAACGACGACGTTGTTGATCTTCTTCCCAAAACGACGCCGCCTCACCAAAACGACGATCTTCTTACGAAAACGACGTCGTCTCATCAAAACGACGATCTTGTTACGGAAACGACGCCGTCTTGTACTCCTTCGACTAAGCCACCTGTGCTATTTGTTTACTCTCGCCGGAGAAAGAGGGGACAGAATTATGTTAAAACGAAGTCGTTTTATGAGTCGTTGATGGAACAACAAGGTGAAATTGAAATCGAAGAAACTAGGTTTAATAAGAAGAGGAAAATTGGGAGTACTGAGTTGGAGAAATTGGGTGTGGATTTGAGTGCATTCAGTATTGATAATCTGTATGGTTCTAGGTTTAGAGAATGTCGTAATTCTGGGAAGAGTTATGGTGCTGGTTCTTTGAAGAATTTTCCAAAGTTAGTTTCTGAGTCTGTGAAGAGATGGATAGGGAACGAGAAAGTTATTATGCATGAATGTTTTTTAAATCTTACTTATGGTGCTTGCATATGCGGGCGATCACGGCCTGATAATCAGGTTTATGATTTTGGTACTGTAGGAAGGTTGAGTTTTGATAATGCTGATCCTGAGGCATTCATTGGATTACGATGCAAGGCAATGTTTTGTTATGTTTATTGGCCCATGGATGATAAATCATATTCTGGCTATGTCAAGGGTTATGATACAGAAACTAAGATACATAATGTTAAGTATGATGATGGTGATGAGGAAAATTTAACACTTTCAAAAGAAAATGTAAAATTCCATGTTTCCCGTGATGAGGTGAAACGTTTAAATTTGAGTTATTCCAAAGTTCGTGAAAATATTGTCTCTGATTATGACGTTGAAGAGATGCTTGCATTGGCTGCAAGTCTGGATGATTGTCAAAATTTTGAGCCTGGAGATATTGTATGGGCCAAGCTAACAGGCTACGCAATGTGGCCAGCTGTTATTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTGAAAACACTTTTAGGAGGAAGATCGGTTCCTGTCCAATTTTTTGGAACTCATGATTTTGCAAGGGTTAGAGTGCAGCAGGTGAAATCATTTCTTGGAGGACTTCTTACTGAACTACACACGAAGTGCAAGAAAGTTAGTTTTATTGAAGGCGTAGAAGAGGCAAGAAGGTATTTAAGTGAACAGAAACTTCCTCAGGTGATGCTAGAGTTGCAGAAAGGATGCATAGTTGATGATGGCAACCATGTAAATGGGGAGGATGGGGGATGTACAAATTCCAGTGAAGATTGTTTAAATGATAAAGGAACTTGGATGGCAATGGAAAACATTGAAACTTTTCCTTATGAAGTAGGAGACATGCAAATTATAAGCCTCGGAAAAATAGTTGAAGATTCTGCATCTTTCAGGGATGGAAGATCCATCTGGCCTGAAGGGTACACGGTAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTATCTGCCCTCTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTCCGACCTCTTTTTAGAGTCACAGTTGATGGTGGTGAACAGTTTAATGGTTGTACAGCATCTGCTTGCTGGAATCAGATATACAAAAGGATAAAGGAAATGGAAAAGGATGATTCTGAAGGTTATGTTGCAGAAGCTGGGATAGAAAGGGGCTATGAATCTGGGTATGATATGTTTGGTTTCTCCAATCCCAAAGTGTCTAAACTTATCCAGGGATTATCTAATGCCAAAGTCGCTTCCAAGAATTCAATTTCCAAGTCAGGTTCCAGAAGATGTAATGACTTGCTTGTTGATTATAGGCAGATTCACGTTAATTGGTTTGATCTTGATAGGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATCTATTTCTACAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTACGGAGAAGTGGAACCTGTTAATGGAGTGCTATGGTTATGCAAATTATGTCGTTTGGGTGCTACTTCTCCACCACCTTGCTGCTTATGTCCACTCATTGGAGGTGCAATGAAGCCTACAACAGATGGCCGTTGGGCCCATTTAGCTTGTGCCATATGGATACCTGAAACTTGTTTGGCTGATGTTAAGAGAATGGAGCCTATTGATGGATTGAGTAGAATAAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGGGTCTCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTAGAGTAGCATATCACCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTGGAGCTCGAGAATGAGGACCGGCTCTATCTACTGTCTTTTGATGATGATGAAGATCAGTGCATACGCCTACTTTCTTTCTGCAAAAAACATAGGCAGCCATCTAATGAACCTTATTTTGCCAATGAACGTATTGCTGGAGTTGTCGGTCCATGTTCAGACTATGATCCACCAACCAACCCGTCTGGTTGTGCTCGAACTGAGCCATATGATTACTTTGGAAGGAGAGGCCGAAAGGAACCTGAAGCACTTGCAGCTGCATCACTGAAACGCTTGTTTGTAGAGAACCAACCTTACTTGGTAGGTGGACACTGCCAGCATGGATTGTCAAACGACCTAGAGACTTCTGGCAGAGGAGTCTGTGCTAAATTCTTTTGTAGCCAGCAGAGGCTGAGAACCTCCCTGACTGATGCTTCGAACAACATACTTTCTATTGCCGAGAAATATAAGTACATGAGCGAAACCTTCCGGAAACGACTAGCATTTGAGTCTTATAGTTTGAGATTTAGCCATGGAATTGTCCTCTTACAAAAAATGTTTGAAACTGTTTATGAAGGAAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTACCGTTGCTGATCGGAGAGAGCACTTTATATACAATTCATTAGTGGCAAGTGGTGCTGGAACATATCTGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGAACCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGCGATGAACATATTATAATATTTGCGAAGAGGGACATTGAACAATGGGAAGAGCTCACATATGACTACAGATTTTTCTCGATTGGTGAACGGCTTCCTTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACGGAGGCAGAAGAGCGAGCTGCTAAGCTATATGCACCTCGGAGCGATTTAACAGATTGGAGAGGAGAATAA 3513 0.4113 MAFNPKQQKQKQKLEREEETREGEGEERGSTPLRYIPLDNLYSATSPCRVTVMSKKVKARKLPHQNDDVVDLLPKTTPPHQNDDLLTKTTSSHQNDDLVTETTPSCTPSTKPPVLFVYSRRRKRGQNYVKTKSFYESLMEQQGEIEIEETRFNKKRKIGSTELEKLGVDLSAFSIDNLYGSRFRECRNSGKSYGAGSLKNFPKLVSESVKRWIGNEKVIMHECFLNLTYGACICGRSRPDNQVYDFGTVGRLSFDNADPEAFIGLRCKAMFCYVYWPMDDKSYSGYVKGYDTETKIHNVKYDDGDEENLTLSKENVKFHVSRDEVKRLNLSYSKVRENIVSDYDVEEMLALAASLDDCQNFEPGDIVWAKLTGYAMWPAVILDESLASNCKGLKTLLGGRSVPVQFFGTHDFARVRVQQVKSFLGGLLTELHTKCKKVSFIEGVEEARRYLSEQKLPQVMLELQKGCIVDDGNHVNGEDGGCTNSSEDCLNDKGTWMAMENIETFPYEVGDMQIISLGKIVEDSASFRDGRSIWPEGYTVVRKFTSVTDPKVSALYKMEVLRDPESKVRPLFRVTVDGGEQFNGCTASACWNQIYKRIKEMEKDDSEGYVAEAGIERGYESGYDMFGFSNPKVSKLIQGLSNAKVASKNSISKSGSRRCNDLLVDYRQIHVNWFDLDRCNVCHMDEEYENNLFLQCDKCRMMVHARCYGEVEPVNGVLWLCKLCRLGATSPPPCCLCPLIGGAMKPTTDGRWAHLACAIWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSFDDDEDQCIRLLSFCKKHRQPSNEPYFANERIAGVVGPCSDYDPPTNPSGCARTEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGHCQHGLSNDLETSGRGVCAKFFCSQQRLRTSLTDASNNILSIAEKYKYMSETFRKRLAFESYSLRFSHGIVLLQKMFETVYEGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPTVADRREHFIYNSLVASGAGTYLFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIEQWEELTYDYRFFSIGERLPCYCGFPKCRGVVNDTEAEERAAKLYAPRSDLTDWRGE 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1326 1170 CDD PHD_ATX1_2_like 678 724 IPR042010 -
Lal22g1326 1170 Pfam PWWP domain 364 451 IPR000313 -
Lal22g1326 1170 SUPERFAMILY SET domain 999 1146 IPR046341 -
Lal22g1326 1170 CDD ePHD_ATX1_2_like 734 854 IPR041956 -
Lal22g1326 1170 Gene3D - 272 318 - -
Lal22g1326 1170 Gene3D SET domain 995 1160 IPR046341 -
Lal22g1326 1170 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 26 1167 - -
Lal22g1326 1170 ProSiteProfiles FYR domain FYRN motif profile. 504 563 IPR003888 GO:0005634
Lal22g1326 1170 ProSiteProfiles PWWP domain profile. 363 426 IPR000313 -
Lal22g1326 1170 PANTHER PHD FINGER PROTEINS 26 1167 - -
Lal22g1326 1170 SUPERFAMILY Tudor/PWWP/MBT 357 460 - -
Lal22g1326 1170 ProSiteProfiles FYR domain FYRC motif profile. 567 654 IPR003889 GO:0005634
Lal22g1326 1170 Pfam F/Y rich C-terminus 569 645 IPR003889 GO:0005634
Lal22g1326 1170 MobiDBLite consensus disorder prediction 9 29 - -
Lal22g1326 1170 SMART fyrc_3 571 660 IPR003889 GO:0005634
Lal22g1326 1170 Pfam PHD-finger 691 725 - -
Lal22g1326 1170 SUPERFAMILY FYVE/PHD zinc finger 669 742 IPR011011 -
Lal22g1326 1170 ProSitePatterns Zinc finger PHD-type signature. 679 724 IPR019786 -
Lal22g1326 1170 SMART fyrn_3 519 563 IPR003888 GO:0005634
Lal22g1326 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 727 IPR013083 -
Lal22g1326 1170 Gene3D - 505 645 - -
Lal22g1326 1170 ProSiteProfiles Extended PHD (ePHD) domain profile. 731 855 IPR034732 -
Lal22g1326 1170 SMART set_7 1004 1130 IPR001214 GO:0005515
Lal22g1326 1170 CDD SET_SETD1-like 969 1142 - -
Lal22g1326 1170 ProSiteProfiles Zinc finger PHD-type profile. 676 727 IPR019787 -
Lal22g1326 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 857 IPR013083 -
Lal22g1326 1170 ProSiteProfiles Post-SET domain profile. 1130 1146 IPR003616 -
Lal22g1326 1170 SMART PHD_3 789 855 IPR001965 -
Lal22g1326 1170 SMART PHD_3 678 725 IPR001965 -
Lal22g1326 1170 ProSiteProfiles SET domain profile. 1004 1124 IPR001214 GO:0005515
Lal22g1326 1170 Gene3D - 351 461 - -
Lal22g1326 1170 Pfam F/Y-rich N-terminus 510 560 IPR003888 GO:0005634
Lal22g1326 1170 Pfam SET domain 1015 1123 IPR001214 GO:0005515
Lal22g1326 1170 SMART PostSET_3 1130 1146 IPR003616 -
Lal22g1326 1170 MobiDBLite consensus disorder prediction 87 109 - -
Lal22g1326 1170 MobiDBLite consensus disorder prediction 1 34 - -
Lal22g1326 1170 SMART PWWP_4 361 424 IPR000313 -
Lal22g1326 1170 Pfam PHD-zinc-finger like domain 733 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1326 Lal-Chr22 16136478 16150114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1326 679 825 C2H2 Transcription Factor Family AT3G14740 39.735 3.55e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal22g1326 zf-HC5HC2H_2 1.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1326 - - lang:109356942 2003.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0577 18 4887704 4901129 Lal22g1326 22 16136478 16150114 LSH