Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1320 ATGTTCCCTTCCACAGGCCCTTACCCTAATTACTTTCTTTCATCTTCTTCATCATACCAACCTTTCACTTTCCTTAACCCTGAAAATGCTTCAGCAAATAACAACATATTCCCCCATGATCCATTTTATGTTCCCTATAACATACCCTCTACTCATCATCATTTTTCAATGTCAGAAACACCAGAAAATTTTGAAGTTGCAGATAATTATGCAGCTGCAATGTTCAAAAATGATGCCAATGGATCCAATAACTTTGGCTTCTCAAATTTTCTCACCAAAAAACCAGCTGCAAAGAAAGACAGGCACAGCAAGATCCTCACATCTCAGGGTTTGAGGGACAGGAGGGTGAGATTGTCGATCAATATCGCGCGAAAGTTCTTCGATCTTCAAGAAATGTTAGGGTTTGACAAAGCCAGCAAAACCCTTGAGTGGCTCTTCAACAAGTCCAAGAAACCTATGAAGGATCTTGCTAGAAGCAACCATCACAGTAGCAATGATTTTGCCAATAGCCTCTTCTCTTCTTCTTCTTCTTCTTCTTCAGATTCGGAGTGTGAAGTGGTTTCAATGACCAAACAAGATGCCACTAATCCACAAGGGGTAGTAGTGGATTCAAAAGAGAGGAAGGTGAAAAGGGCAAAGATGAAAGAATCTAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAAGACTAGTAACAAGATGTGCAACACAAGTGTCATGACAAAAACATGTCCTATAACTGATAACCCTCAAATAATGCTTCACCAATTGAGGTCACCCTTTCATCATTCCGAGGATTCGGCGAGATCGCCTAATAATAAGTCGGTTCCTTCTCATCATCACCATCATCATCACCATCATGTTATTGAGGAGTCCATTGTGATCAAGAGAAAATTGAAGCAATCATTGTTGTCTTCTTCTCATCATCACCAAAACCATGTGATCCCTAAGGAAGCAAGTTCTAACAACAACACTGAACACCATTCCTTTCCAATTTTATCTCCAAATTGGGATGCTAATAATGGTGCCACAAGCCGTACCAACTTTTGTGCAGGGCTTCAAATCTTTGGAAAGTCTTGGGAAGAGTGTACAAATCCCCATCTATAA 1104 0.404 MFPSTGPYPNYFLSSSSSYQPFTFLNPENASANNNIFPHDPFYVPYNIPSTHHHFSMSETPENFEVADNYAAAMFKNDANGSNNFGFSNFLTKKPAAKKDRHSKILTSQGLRDRRVRLSINIARKFFDLQEMLGFDKASKTLEWLFNKSKKPMKDLARSNHHSSNDFANSLFSSSSSSSSDSECEVVSMTKQDATNPQGVVVDSKERKVKRAKMKESREKARARAREKTSNKMCNTSVMTKTCPITDNPQIMLHQLRSPFHHSEDSARSPNNKSVPSHHHHHHHHHVIEESIVIKRKLKQSLLSSSHHHQNHVIPKEASSNNNTEHHSFPILSPNWDANNGATSRTNFCAGLQIFGKSWEECTNPHL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1320 367 MobiDBLite consensus disorder prediction 302 332 - -
Lal22g1320 367 ProSiteProfiles R domain profile. 215 232 IPR017888 -
Lal22g1320 367 MobiDBLite consensus disorder prediction 203 229 - -
Lal22g1320 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 366 IPR005333 GO:0003700
Lal22g1320 367 Pfam TCP family transcription factor 97 235 IPR017887 -
Lal22g1320 367 ProSiteProfiles TCP domain profile. 98 156 IPR017887 -
Lal22g1320 367 Coils Coil 211 231 - -
Lal22g1320 367 MobiDBLite consensus disorder prediction 170 232 - -
Lal22g1320 367 MobiDBLite consensus disorder prediction 260 288 - -
Lal22g1320 367 MobiDBLite consensus disorder prediction 170 199 - -
Lal22g1320 367 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1320 Lal-Chr22 16025288 16026476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1320 94 263 TCP Transcription Factor Family AT1G67260 37.097 4.81e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal22g1320 TCP 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1320 - - gmx:100786452 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1320 22 16025288 16026476 Lal19g1416 19 16864961 16866872 ECH
Lal22g1320 22 16025288 16026476 Lal7g1307 7 18425551 18427032 ECH
Lal22g1320 22 16025288 16026476 Lal14g1863 14 18152958 18154429 ECH
Lal22g1320 22 16025288 16026476 Lal22g1320 22 16025288 16026476 ECH
Lal22g1320 22 16025288 16026476 Lal6g1641 6 19134796 19136403 LSH