Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1289 ATGACAATTGGAAATCTTGCACCTAAGTCAGAGAAGAAGAGGTCAAGGAAGAACAAAGCAATTGTTGATGAGAATGCACCTTTGTTGCCTAAAGCTCATGAGAGTGATGCTGGTTTTGATGATTTCAATGGAGCTTCATTTTCTGGTGCTGTTTTTAACTTATCCACCACAATTATTGGTGCTGGGATTATGGCCTTGCCTGCTACCTTGAGAGAGTTGGGGATGGTGCCTGGTCTTATTGCAATTATCTTCATGGCTTTGTTGACCGAGAAGTCGATCGAGTTCTTGATTAGGTTCACCAGGGCAGGGAAGTCTTCTTCTTATGGAAGTTTGATGGGGGATTCCTTTGGAAAATATGGAAAAGCTCTGGTGCAATTATGTGTTATAGTTAATAACATCGGCGTTTTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACCTCTGCAAGTGGAGAACACCATTCCGGTATCTTTGAAGGATGGTTTGGTGTGCACTGGTGGACGGGGCGGACATTTATTGTCCTTGTCACAACACTTGCTATATTTGCTCCCCTGTCAAGCTTTAAGCGAATCGATTCGTTGAGGTTCACATCTGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTTGTCATTGCTGTTGGAATCTCAATTATCAAGATTATAAGTGGAGGCATTGGCATGCCGAAACTATTTCCGGATGTTACTGATATAGCATCAGCCTTAAAACTGTTTACCGTAGTCCCTGTGTTTGTGACTGCCTATATCTGCCACTACAATGTTCACACCATAGATAATGAACTTGAGGACTCCTCACAGATACAAGGGGTTGTAAGAACTTCCCTTGGCCTATGCTCTTCAGTGTATATAATGATAAGCTTCTTTGGGTTCCTCCTATTTGGTGACGGAACTCTTGATGATGTTCTTGCTAATTTTGATACGGATCTTGGAATCCCATTTGGTTCTGTGCTCAATGATGCTGTTCGATTAAGCTATGCTGCGCATCTCATGCTTGTATTTCCGGTGGTCTTCTATCCATTGCGGCTCAACATAGATGGTCTCATCTTCTCTAAATCAAAGCCTTTGGTTCTGGATAACTTCAGATTTGCATCACTCACCATTGCCCTTATCGGTGTTATCTTTCTGGGAGCAAATTTCATCCCTAGCATTTGGGATGCTTTCCAGTTCACCGGAGCAACCGCTGCAGTTTGTCTTGGATTCATATTTCCAGCTGCCATCGTTCTTAGGGACCGATACGATATAACAACTAAAGGAGACAAGATTCTGTCTGTGTTTATGATAGTCCTGGCAGTCTTCGCAAACGCGGTGGCTATATACAGCGATGCCTATGCCTTGTTGAAGCAGAATAAAACATCGCGCGAATGA 1392 0.4282 MTIGNLAPKSEKKRSRKNKAIVDENAPLLPKAHESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLRELGMVPGLIAIIFMALLTEKSIEFLIRFTRAGKSSSYGSLMGDSFGKYGKALVQLCVIVNNIGVLIVYMIIIGDVLSGTSASGEHHSGIFEGWFGVHWWTGRTFIVLVTTLAIFAPLSSFKRIDSLRFTSALSVALAVVFLVIAVGISIIKIISGGIGMPKLFPDVTDIASALKLFTVVPVFVTAYICHYNVHTIDNELEDSSQIQGVVRTSLGLCSSVYIMISFFGFLLFGDGTLDDVLANFDTDLGIPFGSVLNDAVRLSYAAHLMLVFPVVFYPLRLNIDGLIFSKSKPLVLDNFRFASLTIALIGVIFLGANFIPSIWDAFQFTGATAAVCLGFIFPAAIVLRDRYDITTKGDKILSVFMIVLAVFANAVAIYSDAYALLKQNKTSRE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1289 463 Pfam Transmembrane amino acid transporter protein 45 445 IPR013057 -
Lal22g1289 463 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 458 - -
Lal22g1289 463 PANTHER AMINO ACID TRANSPORTER 7 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1289 Lal-Chr22 15636260 15639544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1289 3 463 Amino Acid or Auxin Permease AAAP Family AT3G30390 68.764 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1289 K14207 - gmx:100796345 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1289 22 15636260 15639544 Lal22g1289 22 15636260 15639544 ECH
Lal18g0555 18 4685347 4689226 Lal22g1289 22 15636260 15639544 LSH
Lal22g1289 22 15636260 15639544 Lal6g1608 6 18650445 18653709 LSH
Lal12g1395 12 17041306 17046075 Lal22g1289 22 15636260 15639544 PCT
Lal22g1289 22 15636260 15639544 Lal12g1395 12 17041306 17046075 PCT