Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1286 ATGGAATCCTCCACCCGTGAGGAAGAGAATCAGAGTTTGTTTATTCGTACCGCGGATCATCTGAACCGAAGAGGGAGGGTACTGGTTTGCGGAGGCAGCGGGACTTCTGCGAGCTTAGAATCCTCTCACTTACTTATGAAAGCAGTTGATGATTTTGAAGATTATATGAATCGTAACAGTCATGTATATAGGGCCTGCCCGTGTCTTGGTTGCTTCATGCAGAACCTTTTGAATGTTTATGCAATGATATTCCGTAGAGGGGAAGTGCGTGCAATTCCTTCGTCTATACAAGGTGCAACATCTATGACTTCTACATCATCACTCGACAATCCACTGTCTGACATTTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCGAGGTTTTTCCGCTCACAGCGTGATGGACTAGTTTCAAGACGCGAGAAAGGTTCAAGTCATACAAATGAGGAGTCAGAGCCGCTAAGAAGTGATGTAGAGGTGGACCTAGAGTCTTTAAATACGGGTGGGAAATGGAACGATAGTGCCGGTGAAGATGGATCGAAGGAATACCGTTCTAAGTCCTCACTAAGACTTTCATCTGCAAAACTTACAACTGGAGTCGGGCTCGTCTATTCTTCATCGGAAGAGGAGGATGTGTGCCCAACTTGTCTTGAAGAATACACCGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACACTTGTCCAGTTTGCGGGAAGGTGATGGTATTCGATGAAACAACGTAA 801 0.4532 MESSTREEENQSLFIRTADHLNRRGRVLVCGGSGTSASLESSHLLMKAVDDFEDYMNRNSHVYRACPCLGCFMQNLLNVYAMIFRRGEVRAIPSSIQGATSMTSTSSLDNPLSDIYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHTNEESEPLRSDVEVDLESLNTGGKWNDSAGEDGSKEYRSKSSLRLSSAKLTTGVGLVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1286 266 MobiDBLite consensus disorder prediction 99 113 - -
Lal22g1286 266 MobiDBLite consensus disorder prediction 99 161 - -
Lal22g1286 266 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 48 265 - -
Lal22g1286 266 MobiDBLite consensus disorder prediction 130 161 - -
Lal22g1286 266 SUPERFAMILY RING/U-box 211 263 - -
Lal22g1286 266 Pfam RING-H2 zinc finger domain 211 256 IPR024766 GO:0008270
Lal22g1286 266 SMART ring_2 216 256 IPR001841 -
Lal22g1286 266 ProSiteProfiles Zinc finger RING-type profile. 216 256 IPR001841 -
Lal22g1286 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 263 IPR013083 -
Lal22g1286 266 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 48 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1286 Lal-Chr22 15580253 15585892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1286 48 265 C3H Transcription Factor Family AT5G15790 59.193 3.39e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1286 - - gmx:100788192 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1286 22 15580253 15585892 Lal22g1286 22 15580253 15585892 ECH
Lal18g0547 18 4622538 4627103 Lal22g1286 22 15580253 15585892 LSH
Lal22g1286 22 15580253 15585892 Lal6g1589 6 18385863 18390687 LSH