Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1278 ATGGGCATCTTTTTGATACCCAAAGCAACTTCTTGCATTTTGTTCTTGTTTCTTCTGTCTTGTACTTGCTTCATTTCAACAGATGCTTATGATCCACTTGACCCAAATGGAAATATCACAATCAAATGGGATATTATAAGTTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATCGCGTCGCCTGGCTGGTCATTAGGATGGACATGGGCAAAGAAGGAGGTAATTTGGAGTATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATTTAAGGGAACCCCTCCTCATTGCTGTAAAAAGGATCCAACAGTTGTGGATTTACTTCCAGGAACACCTTACAATATGCAAATCGCCAATTGCTGCAAAGGCGGGGTACTCAGTTCTTGGGCGCAGGATCCCACCAATGCGGTTTCATCATTTCAAGTCAGTGTTGGTAGAGCTGGAACTACAAACAAAACTGTCAAAGTACCGAAAAACTTCACCTTGAAAGCACCAGGACCAGGTTATACTTGTAGTCCGGCGAAAATTGTGAAGCCGACTCTATTCATTCAATCAGACAAAAGGAGAGTGACTCAAGCACTCATGACTTGGAACGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACTCCGAGTTGTTGTGTCTCCCTCTCGTCATTCTATAACGATACTATCGTACCATGCCCGACATGCACATGCGGCTGCCAGGGAAACTCATCTCAAACAGGGACATGTGTGAATGGAAATACGCCGCATTTGGCATCGGTTGTTTCTGGACTGCATAATTCTGCACCTTTAGTCCAATGTACTAGTCATATGTGCCCTGTCAGAATCCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGCGTTAAGGTCACTATTACCAATTTTAACTATAGGATGAATTATTCGGACTGGAACATGGTTGTTCAACACCCAAACTTCGACAATGTGACTCAACTATTCAGTTTCAACTACAAGTCATTAACTCCGTATGGAACAATAAATGATACAGCAATGCTCTGGGGATTTAAGTTCTACAACGATTTTCTTAGTCAAGCCGGCCCTGATGGTAATGTACAATCAGAGATACTCTTCAGAAAGGATAAATCAACTTTTACTTTTGACAAGGGTTGGGCTTTTCCGAGAAGGATCTATTTTAACGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCATGGCTACCTAACGCCGGTTCTCGGCAAGAAATTTCGTTGCTTGCTTTAGTGATGTCTTCTTTGGTATCCTTGGTACTTTATGCATATGTTTAA 1341 0.4228 MGIFLIPKATSCILFLFLLSCTCFISTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGTPPHCCKKDPTVVDLLPGTPYNMQIANCCKGGVLSSWAQDPTNAVSSFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCSPAKIVKPTLFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCTCGCQGNSSQTGTCVNGNTPHLASVVSGLHNSAPLVQCTSHMCPVRIHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNMVVQHPNFDNVTQLFSFNYKSLTPYGTINDTAMLWGFKFYNDFLSQAGPDGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRQEISLLALVMSSLVSLVLYAYV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1278 446 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Lal22g1278 446 PANTHER PROTEIN COBRA 8 445 IPR006918 GO:0010215|GO:0031225
Lal22g1278 446 PIRSF COBRA 3 446 IPR006918 GO:0010215|GO:0031225
Lal22g1278 446 PANTHER COBRA-LIKE PROTEIN 8 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1278 Lal-Chr22 15447454 15452198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1278 1 444 COBRA Gene Family AT3G02210 73.068 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1278 - - gmx:100783820 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1278 22 15447454 15452198 Lal22g1278 22 15447454 15452198 ECH
Lal13g1752 13 17079088 17082641 Lal22g1278 22 15447454 15452198 PCT
Lal24g1326 24 14584071 14587373 Lal22g1278 22 15447454 15452198 PCT
Lal22g1278 22 15447454 15452198 Lal13g1753 13 17082923 17085752 PCT
Lal22g1278 22 15447454 15452198 Lal24g1328 24 14587551 14590481 PCT