Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1260 ATGAGCTACACCACTTTCTCTGATTTGCACCAAACCCAAACCCAAACCCATACCCCAATTTCTGATTACACACTTTCTATACCCTCATACCCTCATTACGTTTCTTACCCTCAAAACCCTAACCCTTCTTCTTATGAACCCTCTCTTGAAACCCATGTTGTGGAACCTGGTCTCAACCCTCCAGGGGTGGATTCTTATACGCCATTAACAGCAACGAATTCAATTACCCATCTGGGTCATGAAGCTATTCCCAATTACTGTTATGGTCATGGCCATGTTGTTGATTCGAGTTCGTTAGAAGGGTCTTCTGTGTACTATTTGAACCCTAATTCTCAGAATTGGGCTGCTAGTGATTCTGTTGTCACCACTACACCATTAAATGTCTCAGAACAATTGGCTGCTGCGTATCCTAACCCTGCGTGGTGGATCAACACCGCAACTCAACCTCGCGGAAACGAAACATGGAAGAAATACCCAAAGAAAGTTAAAACCAACATTGTAAAACCTGCATACTGTGAAGTTTGCAAGATAGAATGCACTAGTGTGGAAGTACTGCACCAACATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAGGCACTAAGAGAATCATTGAAACCATTTCAGAGTCATCCATCTGGTTCCTCTAATCCTTTTATAGGGCCACAAGTACAGAACGACCCGAGCAAATCCGCGAGCGGGAGTAAGAGGAAAACAGCTGAAACCCCAGAGGATTTGGAGAAAAAGAAAAGGAAGGTTCTTGAAGGGGGAGCAGCTGCTGAAGCAGTTAGAATATGTGCTGTATGTAATGTGGTGTGTAATAGTGCCATAGTTTATGGTTATCATCTTAAAGGACAAAAGCATGCTGCTATGATGAAGAAAGCATCTGAACTTTCACAATCCAATGTCAGATAG 915 0.4273 MSYTTFSDLHQTQTQTHTPISDYTLSIPSYPHYVSYPQNPNPSSYEPSLETHVVEPGLNPPGVDSYTPLTATNSITHLGHEAIPNYCYGHGHVVDSSSLEGSSVYYLNPNSQNWAASDSVVTTTPLNVSEQLAAAYPNPAWWINTATQPRGNETWKKYPKKVKTNIVKPAYCEVCKIECTSVEVLHQHKLGKKHKKNLEALRESLKPFQSHPSGSSNPFIGPQVQNDPSKSASGSKRKTAETPEDLEKKKRKVLEGGAAAEAVRICAVCNVVCNSAIVYGYHLKGQKHAAMMKKASELSQSNVR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1260 304 PANTHER - 20 297 - -
Lal22g1260 304 PANTHER ZINC FINGER RNA-BINDING PROTEIN 20 297 - -
Lal22g1260 304 SUPERFAMILY beta-beta-alpha zinc fingers 264 295 IPR036236 -
Lal22g1260 304 SUPERFAMILY beta-beta-alpha zinc fingers 165 202 IPR036236 -
Lal22g1260 304 Pfam Zinc-finger double-stranded RNA-binding 171 195 IPR022755 -
Lal22g1260 304 SMART ZnF_U1_5 261 295 IPR003604 GO:0003676|GO:0008270
Lal22g1260 304 SMART ZnF_U1_5 167 201 IPR003604 GO:0003676|GO:0008270
Lal22g1260 304 MobiDBLite consensus disorder prediction 1 22 - -
Lal22g1260 304 Gene3D Classic Zinc Finger 152 200 - -
Lal22g1260 304 Gene3D Classic Zinc Finger 233 296 - -
Lal22g1260 304 Pfam Zinc-finger of C2H2 type 266 288 - -
Lal22g1260 304 MobiDBLite consensus disorder prediction 208 236 - -
Lal22g1260 304 MobiDBLite consensus disorder prediction 207 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1260 Lal-Chr22 14915944 14919628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1260 166 298 C2H2 Transcription Factor Family AT5G61190 36.090 5.68e-16 76.6