Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1251 ATGGGGTTGAAATTTTCAAAGCCAGGCCAACCCAAAATTAATCATAGACTAAGTTTACAAGATCACATGATAAATTACCTAACCAAAAATTTTATTCGTAACTTGGTATCTAAGCAACGGAGAAGAATGCTGATTGCTGGTTATGATCTTGACATGTCATATATCACAGATCGGGTATTAGCTATGTCTTTTCCTTCAGAACGTATGCGTGCAATGTATCGAAATCCTCTTTGGCAAGTCAAATCTGTGTTGGATATGAGACATCAAGATCATTATAAGATATATAATTTGTGTATAGAAGAAAGTTATGATCCAGCACACTTTTATGATCGTGTAGAAGCATATCCATTTGATGATAACCATGTTCCAACTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCAAAAAACATTGCAGTTATACATTGCATGGCAGGGAAAGGGAGAACTGGCTTAATGGTGTGTGCATACCTAACTTATTGTGGCATGTCAGCAGATGAGGCTCTTCAGTTGTATGCAGATAGAAGAACAACCAATAATGAAGGAGTATCAATACCAAGCCAGCGTCGTTATGTGGGATATTGGGAGAGTGTGCTTTCTTTCCCTACAAGGAGTGCAGGAAATGGACCACCAATTGTGAACTTGCCTCCATCATGCAGCAGAGAATTGAGGCGAATCAGGCTTTATGATACAGTTAACATTGACACTGTATTCTTTGTCATCTCAGAGCTACAAGAGGTTCCTAATCAGGCTTACCATCCTTCAGTGGAAGTTTCTAGGAGCTGTTGCAGACAGGTTAAGAAAGGCTATTATAGAACAAACAGTCCTCGCTATTATATTTCCTATGTTGAAGGTCATGAAAATGGAAATCAAACAGAACCAGAAGAACCTCGTATTGTTGTTCAAATGGACACTGAGAGTCCTATAATTTACAAAAAATCCTGTCTAGACCATTATTTTGATCAACCTATAAAACTCACAATAAGGGACTTGGACAAAGTTGGAAAGAAAGTAAGATCAATATGTGGTCCTGCATTTTGTGTAGAATTACTCTTTGGTCCTGCAAATACAGGACTTTCATCATCAAGTATATCCATTGGTGACAATTTTAGTGATGATACATTCTAA 1152 0.3785 MGLKFSKPGQPKINHRLSLQDHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSERMRAMYRNPLWQVKSVLDMRHQDHYKIYNLCIEESYDPAHFYDRVEAYPFDDNHVPTLEMIKAFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESVLSFPTRSAGNGPPIVNLPPSCSRELRRIRLYDTVNIDTVFFVISELQEVPNQAYHPSVEVSRSCCRQVKKGYYRTNSPRYYISYVEGHENGNQTEPEEPRIVVQMDTESPIIYKKSCLDHYFDQPIKLTIRDLDKVGKKVRSICGPAFCVELLFGPANTGLSSSSISIGDNFSDDTF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1251 383 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Lal22g1251 383 SMART PTPlike_phytase_2 50 169 - -
Lal22g1251 383 PANTHER BNAC03G16750D PROTEIN 1 334 - -
Lal22g1251 383 Gene3D Protein tyrosine phosphatase superfamily 27 209 IPR029021 -
Lal22g1251 383 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Lal22g1251 383 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Lal22g1251 383 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 334 - -
Lal22g1251 383 Pfam Tyrosine phosphatase family 129 181 IPR026893 GO:0004721
Lal22g1251 383 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Lal22g1251 383 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1251 Lal-Chr22 14724869 14737016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1251 1 363 Protein tyrosine phosphatase (PTP) family AT5G39400 62.344 2.69e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1251 K01110 - gmx:100809938 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0536 18 4453676 4457864 Lal22g1251 22 14724869 14737016 LSH