Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1239 ATGGCAGCTTGCACTTTCACGGTGTCACAGAATGGAGAAGGAGATTTCCAAACGGTGCAGGAAGCAATTGACGCTGTGCCGCTCGGCAACACTAGCCGGACGGTGATCCGCTTGTCGCCGGGAATCTACCGGCAGCCGGTGTACGTTCCCAAGACCAAGAATTTCATCACTCTTGCTGGTTTATGCCCTGAGGACACTGTTCTTACTTGGAATAACACCGCTGCTGGAATCGATCACCATCAAGTATGCACATTTAGTTGGCTCAGTGTTTTAAATTGCAGTAACTGTTGCGGCTATTGCGATTGTGGTCAATGCGGCCATTACGATGCGGATTGCGGCCGTTATGGTGTGAACCATTTTGTTATTAAAACAATATTTTTGAATCCGATGGGCAAATGCGGTTGCATTGCGGCCCGATGCGGCCGCATCATTGTGTTTCTGAGTCACATCGTAATTGCAGTGTGA 465 0.4903 MAACTFTVSQNGEGDFQTVQEAIDAVPLGNTSRTVIRLSPGIYRQPVYVPKTKNFITLAGLCPEDTVLTWNNTAAGIDHHQVCTFSWLSVLNCSNCCGYCDCGQCGHYDADCGRYGVNHFVIKTIFLNPMGKCGCIAARCGRIIVFLSHIVIAV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1239 154 Pfam Pectinesterase 7 86 IPR000070 GO:0030599|GO:0042545
Lal22g1239 154 PANTHER PECTINESTERASE 1 95 - -
Lal22g1239 154 SUPERFAMILY Pectin lyase-like 2 87 IPR011050 -
Lal22g1239 154 Gene3D - 2 97 IPR012334 -
Lal22g1239 154 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1239 Lal-Chr22 14557598 14558062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1239 7 95 Carbohydrate Esterase AT5G47500 37.363 3.00e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1239 K01051 - gmx:100786786 147.517