Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1238 ATGGTAATAGGAACTGGAACATTTGGTTGTGGAACTACCATTGTGGAAGGGGGGGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTTCACCTGAGGGTTCAGGACAAGCCGTGGCAGTTAGAGTAACAGCTGATCGATGCGCCTTCTATAATTGCAGGTTCCTTGGGTGGCAGGGATGTTTTGCCGCCCTGGTCCTACCTGACTCGAACAGGATTGCCTCAGTGGAGGATACCTGTGGTTTAAACCGAAAAGATATCGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCTCTTTTGGAGCACTGTCATATCCACTGCAAATCTGCTGGGTTCATAACTGCTCAGGGCAGAAAATCTTCACAGGAATCAACTGGTTATGTATTTTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCATGTCTTGGACGACCATGGGGACCGTTCGGAAGAGTGGTCTTTGCGTACACATATATGGATCCATGTATAAAGCATGATGGATGGGATAACTGGGGGAACACAGAGAATGAAAGAAGTGCTTGCTTTTATGAATACAGGTTAAATTCAAATCAGGATCTGTTTTATTATTGTTAG 606 0.4356 MVIGTGTFGCGTTIVEGGDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQGCFAALVLPDSNRIASVEDTCGLNRKDIGSVDFIFGNSTALLEHCHIHCKSAGFITAQGRKSSQESTGYVFLRCVITGNGGNSYACLGRPWGPFGRVVFAYTYMDPCIKHDGWDNWGNTENERSACFYEYRLNSNQDLFYYC 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1238 201 Pfam Pectinesterase 4 190 IPR000070 GO:0030599|GO:0042545
Lal22g1238 201 PANTHER PECTINESTERASE 4 191 - -
Lal22g1238 201 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 191 - -
Lal22g1238 201 Gene3D - 2 196 IPR012334 -
Lal22g1238 201 SUPERFAMILY Pectin lyase-like 3 190 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1238 Lal-Chr22 14547808 14550437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1238 6 189 Carbohydrate Esterase AT1G05310 35.678 9.87e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1238 K01051 - gmx:100795636 306.99