Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1230 ATGTCCACCCCCAACGCCGTTTCCACCACTGCGCCCTCCCCTCCCTCGCGTCCCACGATTATTCTCCCTCCTCGCCCCTCCGCCGATGCCTTCTTTTCCGTCGGCGGCGTCAGCCCCGGCCCCATGACCCTAGTCTCAAATTTCTTCTCCGACGGGGGCTACTCCGACACCGACTACCGCTCCTTCTCCCAGCTCCTCGCCGGAGCCATGGCCTCTCCACTAGCGTTTGGAGCAGCTCAGACCCCTTTCAGCGTCCCCACCGACAATTCAGGCGAAGAAGACGGTGGGGTCCTCAAGAGTTTGGGGTTCAAGCAGAGTAGACCTATGAATTTGATAATCGCTCGTTCTCCTATGTTCACAATCCCACCTGGGTTGAGCCCTTCTGGGTTTCTCAACTCGCCTGCCTTCTTTTCGCCACAGAGCCCCTTTGGAATGTCCCACCAACAGGCATTAGCACAGGTTACAGCTCAAGCTGTCTTAGCACAATCTCATATGCACATGCAAGCTGATTATCAGTCGTCTTCTGCAGTAACTGCTTCCACTGAACCAATGGTAGAGCAGCCATCTATTCCTCTAAATAAAGCTTCAGAGCAGCAAGTGTTACCATCTGTATCAGAACCTATAAATGCTCAACCAGGAACATCACAGCTTACTCAAGCTGATAAGAAATATCAACCATCTTCTGTGCCCATTGACAAACCTGCAGATGATGGCTACAATTGGCGTAAGTATGGGCAGAAGCATGTTAAGGGGAGTGAGCATCCACGGAGCTACTACAAGTGTACACAACTGAATTGCCCTGTGAAGAGAAAAGTTGAGCGTGCACCTGATGGCCACATAAACGAAATCATCTATAAAGGCCAGCATAACCATGAAAAACCTCAGGGAAATAGGCGTATAAAAGATAATATTGATACAAATGGAAATGCAAGTGTTCAACCTAATACTGATTCAAACTCTCAAGGTTGGGTAGGAAGTTCAACCAAGAACACTGATATCGCTGTTTCTGAAGCACCTCTTTCTCAGAAGACTGCCACAGAGGCCAAAATCATTGTACAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAGGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAATGCACTAGTGCAGGATGCAATGTGCGTAAACATGTCGAGCGAGCTTCAACCGACCCAAAAGCAGTCATAACAACATATGAGGGAAAACATAATCATGATGTGCCTGCTGCTAGAAACAGCAGCCACAACACAAGCAGTAGCAGTTCAATGCCATTAAAACCGCATAATGTGGTACCTGAGAAGCATCCTTTGCTTAAAGATATGGATTTTGGAGTTACTGACCAAACACCGGTACATTTACGCCTAAAAGAAGAGCAAATTATAGTATAA 1428 0.4748 MSTPNAVSTTAPSPPSRPTIILPPRPSADAFFSVGGVSPGPMTLVSNFFSDGGYSDTDYRSFSQLLAGAMASPLAFGAAQTPFSVPTDNSGEEDGGVLKSLGFKQSRPMNLIIARSPMFTIPPGLSPSGFLNSPAFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQSSSAVTASTEPMVEQPSIPLNKASEQQVLPSVSEPINAQPGTSQLTQADKKYQPSSVPIDKPADDGYNWRKYGQKHVKGSEHPRSYYKCTQLNCPVKRKVERAPDGHINEIIYKGQHNHEKPQGNRRIKDNIDTNGNASVQPNTDSNSQGWVGSSTKNTDIAVSEAPLSQKTATEAKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTSSSSSMPLKPHNVVPEKHPLLKDMDFGVTDQTPVHLRLKEEQIIV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1230 475 MobiDBLite consensus disorder prediction 236 254 - -
Lal22g1230 475 MobiDBLite consensus disorder prediction 301 327 - -
Lal22g1230 475 MobiDBLite consensus disorder prediction 206 225 - -
Lal22g1230 475 SMART WRKY_cls 361 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 SMART WRKY_cls 235 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 328 474 IPR044810 GO:0003700
Lal22g1230 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 332 IPR044810 GO:0003700
Lal22g1230 475 MobiDBLite consensus disorder prediction 206 254 - -
Lal22g1230 475 PANTHER WRKY PROTEIN 328 474 - -
Lal22g1230 475 PANTHER WRKY PROTEIN 12 332 - -
Lal22g1230 475 ProSiteProfiles WRKY domain profile. 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 MobiDBLite consensus disorder prediction 285 300 - -
Lal22g1230 475 MobiDBLite consensus disorder prediction 285 327 - -
Lal22g1230 475 MobiDBLite consensus disorder prediction 416 445 - -
Lal22g1230 475 MobiDBLite consensus disorder prediction 423 439 - -
Lal22g1230 475 Pfam WRKY DNA -binding domain 362 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 Pfam WRKY DNA -binding domain 236 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 SUPERFAMILY WRKY DNA-binding domain 353 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 Gene3D WRKY domain 225 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 Gene3D WRKY domain 345 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 SUPERFAMILY WRKY DNA-binding domain 234 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g1230 475 ProSiteProfiles WRKY domain profile. 356 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1230 Lal-Chr22 14480320 14491666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1230 16 473 WRKY Transcription Factor Family AT2G03340 50.096 1.57e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal22g1230 WRKY 9.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1230 - - aip:107635357 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1230 22 14480320 14491666 Lal6g1527 6 17279440 17288962 LSH