Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1187 ATGCGGATTGCAACCATTGCGGTTACTGCGATTGCAATCATTGCAGCCGCTGCAATGCAGATTGCGGCCATTGCGATGGAATGCTTAGAGGGAAGATCTGTAGTACACCTTGAAAATGCTAGCCTACTTGGACCTTCTTCATTTCAAAGAAAAAGCCTATCTTTTGGAGAGGATTCACCAATTGATCATGATTGTGAGAAGTTATCTCAAGATGTAGTAAGAAGTAAGGTGCTTAGCAGCATAAAAGTTGTAGTCCTTTCCACCAAGATAAACTTGCTCATGCCTTTTGGCCCCATGGCAATTTTGGTAGATAATTTGTTTGATAGTCATGGATTGGTCTTTCTTTTCTGCTTATTGGGCATTATACCCTTGGCAGAGCGTTTGGGTTATACAACAGAGCAACTAGCTTTGTTTACTGGACCTGCAGTTGGAGGACTTTTATATGCCACATTTGGAAATGCCACAGAATTAATTATATCAATACATGCCCTGAAAAGTGGTTTGATTCATCTTGTTCAACAATCACTACTAGGCTCAATATTGTCAAACCTCTTGCTAGTGCTTGGATGTGCATTATTTGCTGGTGGAGTAGTGTTTTATAAGAGAGAACAAGCATTTAATAGAACAGATACTACTGTGGATTTTGGATTACTATTGATGGCAGTAATGGGTCTGATATTTCCAGCAGTTCTCCATGCTACACATACAGAATTAGAAAATGAGAAATCTGAGTTAAATCTTTCAAGATTTACAAGTTGCATTATGCTTGTGGCTTATGTTTGCTACATAGTGTTTCAAGTGAAGAGTCAGAAGAATTTACAAGCTCTAGTCGAAGAGGATGGAGGTCTTAGTAAAGAGACTTCAGATGATGAAGAAGTTCCTGAGATTTCAATGTGGGAATCAATGATATGGCTGGCAATCTTAACTGGAGGTATATCAGTCTTGTCAGAATACTTGGTTAAAACCATAGAGGGGGCATCAAAAGAGTTGAAAATGCCTATGGCATTTCTTAGTGTTATTCTTCTCCCTATAGTTGGGAATGCTGCAGAACATGCTGGATCTGTAATGTTTGCTGTCAAAGACAAACTTGAATTATCTCTTGAAGTGGCCGTAGGATCTTCAATACAAATATCAATGTTTTTGATTCCTTTTTGTGTGGTATTTGGATGGATGATTGATTGCCCTATGGACTTGAACTTTCAACCTTTCGAGACTACTTCACTTTTCATGTCTGTTATCATAGTTGCCTTCTTGTTGCATAATGGAACCTCGAACTACTTCAAAGGAATAATGCTCATTCTTTGCTATTTGATAGTTTCTGCAAGCTTCTATGTGCATACTGACCCAGCACCAATTGGTGAAAATAATCAATTTACTGCTGATCCGTAA 1389 0.3852 MRIATIAVTAIAIIAAAAMQIAAIAMECLEGRSVVHLENASLLGPSSFQRKSLSFGEDSPIDHDCEKLSQDVVRSKVLSSIKVVVLSTKINLLMPFGPMAILVDNLFDSHGLVFLFCLLGIIPLAERLGYTTEQLALFTGPAVGGLLYATFGNATELIISIHALKSGLIHLVQQSLLGSILSNLLLVLGCALFAGGVVFYKREQAFNRTDTTVDFGLLLMAVMGLIFPAVLHATHTELENEKSELNLSRFTSCIMLVAYVCYIVFQVKSQKNLQALVEEDGGLSKETSDDEEVPEISMWESMIWLAILTGGISVLSEYLVKTIEGASKELKMPMAFLSVILLPIVGNAAEHAGSVMFAVKDKLELSLEVAVGSSIQISMFLIPFCVVFGWMIDCPMDLNFQPFETTSLFMSVIIVAFLLHNGTSNYFKGIMLILCYLIVSASFYVHTDPAPIGENNQFTADP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1187 462 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 455 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lal22g1187 462 Pfam Sodium/calcium exchanger protein 112 267 IPR004837 GO:0016021|GO:0055085
Lal22g1187 462 Pfam Sodium/calcium exchanger protein 302 440 IPR004837 GO:0016021|GO:0055085
Lal22g1187 462 TIGRFAM caca2: calcium/proton exchanger 77 443 - -
Lal22g1187 462 Gene3D - 288 445 IPR044880 -
Lal22g1187 462 Gene3D - 141 287 IPR044880 -
Lal22g1187 462 TIGRFAM cax: calcium/proton exchanger 94 444 IPR004798 GO:0006816|GO:0015369
Lal22g1187 462 PANTHER VACUOLAR CATION/PROTON EXCHANGER 19 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1187 Lal-Chr22 13383417 13393588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1187 49 449 Antiporters AT1G55730 63.342 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1187 K07300 - jre:109000743 533.487