Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1070 ATGGCTTCACCAAATTACGGCACGCGTGAACACGACCAGTACATGCCAATCGCGAACGTGACAAGGATCATGCGACGCATTCTCCCATCACATGCAAAGATCTCAGACGAAGCAAAAGAGACAGTTCAACAATCTGTCTCTGAGTTCATCAGCTTCGTCACTGCCGAAGCAAACGATCGATGCCAAAGTGAGCAGAGGAAAACTGTAACTGCAGAAGATCTTCTATTTGCTATGCAGAAGCTTGGTTTTGATGATTATGTTGAACCTCTTTCTCTTTACCTTCAACGCTACCGTGAGAGTGAAGCTGAACCCTTTGCTGGTACTAGAGTTTTTAATTATGGTTCTCATTCTCTGCCACCACCACCACTGCAACCATTGGCTGCTGGCGTGTCTTATGGTTCTCATTCTCTGCCACCACCACCACAACCGCAACCAATGTCTGGTGGGGTGCCTTATGGTTCTCATTCTCTGCCACCACCACCACAACCGCAACCATTGGCTGGTGGCGTGTCTTATGGTTCTCTTTCTCTGCCACCACCACCACCACCGCAACAACTGGCAGGTGGCATGTCTTATGGTTCTAATTCTGCGCCACCACCACCGCAACCATTGCCTGGTGGCGTGTCCTATGGTTCTCATTCTCTGCCACCACCACCACCGCAACCATTGGCTGGTGGCGTGTCTTATGGTTCTAATTCTGTGCCACCACCACCACAACCATTGGATGGTGGCGTGTCTTATGGTTCTCATTCTCTGCCACCACCACCACCGCAACCATTGGCTGGTGGCGTGTCTTATGGTTCTGGTTTTACTCCTCCTGGTCATGGAATGTATGACCCATCAGGATCAGCATCAGCATCAAGCATGTTTGATAGGGATGATGGGTCTGGCTCTGGGAATTATAGCATTGCTGGTTTTGATAACATCAAACGTATGTGA 939 0.4952 MASPNYGTREHDQYMPIANVTRIMRRILPSHAKISDEAKETVQQSVSEFISFVTAEANDRCQSEQRKTVTAEDLLFAMQKLGFDDYVEPLSLYLQRYRESEAEPFAGTRVFNYGSHSLPPPPLQPLAAGVSYGSHSLPPPPQPQPMSGGVPYGSHSLPPPPQPQPLAGGVSYGSLSLPPPPPPQQLAGGMSYGSNSAPPPPQPLPGGVSYGSHSLPPPPPQPLAGGVSYGSNSVPPPPQPLDGGVSYGSHSLPPPPPQPLAGGVSYGSGFTPPGHGMYDPSGSASASSMFDRDDGSGSGNYSIAGFDNIKRM 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1070 312 PRINTS CCAAT-binding transcription factor subunit A signature 42 60 - -
Lal22g1070 312 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lal22g1070 312 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lal22g1070 312 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 78 IPR003958 -
Lal22g1070 312 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 103 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal22g1070 312 SUPERFAMILY Histone-fold 12 103 IPR009072 GO:0046982
Lal22g1070 312 Gene3D Histone, subunit A 4 109 IPR009072 GO:0046982
Lal22g1070 312 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 8 103 - -
Lal22g1070 312 MobiDBLite consensus disorder prediction 122 312 - -
Lal22g1070 312 MobiDBLite consensus disorder prediction 281 295 - -
Lal22g1070 312 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1070 Lal-Chr22 9564186 9565124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1070 8 103 CCAAT-HAP3 Transcription Factor Family AT5G47670 73.958 2.77e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal22g1070 CBFD_NFYB_HMF 3.8e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1070 K08065 - cpap:110820722 170.629