Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1014 ATGTTTTTTCCAATGGTAACAACAGATCCAGATGCAGATGTAATAACACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTGTATGTAACGTTTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAAAAGTACAAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAACCCACATGTGTTCACCATGACCCTTCAAGAGCTCTTGGAGATCTCACTGGGATTAAGAAACACTATTCTCGCAAGCATGGTGAAAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACAAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGGCGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATACACTAGCACATGAAACTGCAAGACACCCTATTAACCTAAACCCTTTGGGAACTCATTTGTTTGGCACCACAAACCACATGAACTCAAGCCAATATCAAGTGGGTGCTCAAATTTCTAACCTTCAAAACCAGAACCAAGCAACCACCAACAACACTATCTTGAACCATGATAATGCTTCTTTGGCACCACCGAAGTTTGAACACATTTTCTCACCTTTGCATCACCATTCATCATATGGAGGAGTTCAATCACCACATTCAATGTCTAATTCCTCAGCTGGTTTCTTCATAAATGGCCCTAATCAAGGATTTCAAGAATTCCAATATCATCAGCAAGAAAGATCAATCTCAAACAACAAACAACTTTATGGTCTTATGCAGCTTCCTGATCTTCAAGGCAACACCAATAACAACAACTACTCTACTTCTGCATCTGTATCTGTTCCTGCTAATATGTTTAACATCAACTTCTTTACCAATAGCAACAATAGCAATGGCAGCATAATCGCTGATCAATTCAACATCAATGGAGAAGGTAACCAAGGAACAACACTTTACACTAATAATAATAGCCCTGTCCGTAATCAAGTTGAGTCTGGTAATTTATCTTCACTCTTTGGAAACTCATTTCTGCAACAAGAAACCATGTCACCGAATATTTCTACCACTGCATTGCTTCAAAAAGCTGCTCAAATGAGTTCAACCACCAATGCTTCTTCCATGGTTAGGGGGCTAGGTAGTTCCTCAACCAATGGTGTAGAATCTTTTGGAAGTGATAGTAGGGGAGAAGGTATAAGATCAAGCATGGAAAATGACCAACACCATCATCTACATGGATTTATGAACTCTATTGCAAATGGAAACAATTCCATATATGGTAATATGGAAGGGAATGAAAACAACCTTGGACAGTTTCACAATGTGGAGGAGCCTAATAAGTTGCCCCAAAACCTTGGTGTGTGCTTTGGAGAATATGATAAGTTGACATTAGACTTTTTGGGTGTTGGAGGAAACATGAATAGTAGGTTTTCACAAAGAGAGCAACACCACCCTATAGGTTCAACGAGTTCTTTGGATCCTAAAATGGAAAGCCAACCTTTTGAAAGTTCAATACTGCAATAA 1581 0.3972 MFFPMVTTDPDADVITLSPKTLMATNRFVCNVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDTLAHETARHPINLNPLGTHLFGTTNHMNSSQYQVGAQISNLQNQNQATTNNTILNHDNASLAPPKFEHIFSPLHHHSSYGGVQSPHSMSNSSAGFFINGPNQGFQEFQYHQQERSISNNKQLYGLMQLPDLQGNTNNNNYSTSASVSVPANMFNINFFTNSNNSNGSIIADQFNINGEGNQGTTLYTNNNSPVRNQVESGNLSSLFGNSFLQQETMSPNISTTALLQKAAQMSSTTNASSMVRGLGSSSTNGVESFGSDSRGEGIRSSMENDQHHHLHGFMNSIANGNNSIYGNMEGNENNLGQFHNVEEPNKLPQNLGVCFGEYDKLTLDFLGVGGNMNSRFSQREQHHPIGSTSSLDPKMESQPFESSILQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1014 526 Gene3D Classic Zinc Finger 6 76 - -
Lal22g1014 526 Pfam Zinc finger, C2H2 type 28 50 IPR013087 -
Lal22g1014 526 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Lal22g1014 526 Gene3D Classic Zinc Finger 82 161 - -
Lal22g1014 526 SUPERFAMILY beta-beta-alpha zinc fingers 27 124 IPR036236 -
Lal22g1014 526 MobiDBLite consensus disorder prediction 494 526 - -
Lal22g1014 526 MobiDBLite consensus disorder prediction 392 420 - -
Lal22g1014 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 501 - -
Lal22g1014 526 SMART c2h2final6 104 124 IPR013087 -
Lal22g1014 526 SMART c2h2final6 69 99 IPR013087 -
Lal22g1014 526 SMART c2h2final6 28 50 IPR013087 -
Lal22g1014 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Lal22g1014 526 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 501 - -
Lal22g1014 526 MobiDBLite consensus disorder prediction 392 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1014 Lal-Chr22 8728664 8733482 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1014 7 174 IDZ Gene Family AT2G02070 86.310 1.33e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g1014 zf-C2H2 0.0015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1014 K25870 - gmx:102663407 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1014 22 8728664 8733482 Lal6g1132 6 8498408 8502395 LSH