Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1009 ATTAAGAGGGTTTGCCATAAGATATATATGGCTGCATCTTCTTCAGCAGCATCACTTCTTGGAATCAGAGAAGTGGATCAGAATCAGATGAACCAACAACAATCCTCAACACCATCATCATCAACAACTCCAGCTGCACCACCCCAGAAGAAAAGAAGAAACCAACATGGAACACCATGCAAATTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTTCATAGAAGAGGGCACAACCTTCCTTGGAAACTAAAGCAGAAAAGTACAAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAACCCACATGTGTTCACCATGACCCTTCAAGAGCTCTTGGAGATCTCACTGGGATTAAGAAACACTATTCTCGCAAGCATGGTGAAAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACAAGAGAATATAGATGTGACTGTGGTACTCTCTTCTCCAGACGAGACAGTTTCATAACCCACAGGGCCTTCTGTGATGCATTAGCTCATGAAAGTGCAAGACAACAACCAAACCTGAACAGTGCCATTGGAAACCAATTGTACGGAAGTAGCAGCATGGCCTTAGCCATATCTCAAGTAGGTTCAATCAATGACCAGAATAACCACCAATCGAGTGACCAATTGTGCCTACGTGCCGCAAGAACCGGTCAATTTGACCACATTCTCCAACCATCCCTTGGCTCATCAACCTTTAAACCTTCACAGCAAACCATGCACTCTTCTCCATTCTTCATGCAAGATGAACCAAACCAAAACCAAAACTATCAAAACAAGCCATTATTCCAAGGACTATTACAATTGGCTGATCTTAACAACAATCACAACAATAATAATCCATTCTGCAGCATCAATAGCAAAAACAACTTATCTGAACATATCAACAATGATCAAGGGTCTAATTTCTTCTCCATAATGAGTGATCATAATCAAACAAGCACCACTACCAATGCTCCTTCTCTATTCAGCACATCTCTACAACAAAGCAATGCCTCCATTTCTCACATGTCTGCAACTGCATTGCTGCAAAAAGCTGCTCAAATGGGTGCAAATTCCAGCAACAACAACAACAACACTGCCTCCTCTATTCTCAGAAGTTTCAGAGGCACTTCCTCCAACAGTGATCAGAGGCCACTTTCTGCTGCAAACTATGACATCATTTTCAGCGGAAACAACAACAACAACCTACAAGAGTTGATGAACTCTTTTGTTGCTAGTGGAAACTCTCCCATATTCGAAAATGGTTCTTCATCTTCTTCTGCAGCTAGGTTTAGTACTGGGTTTCAAGCATATGATAACAATAGCATAAATAGAGAGCCAAAACTGCAAACAGTGAGCATTGGAGGATCTGATAAACTCAGTACTCGTGACTTTCTTGGAGTTGGTCAAATAGTGAGAAGCATGAGTGGAGGAGTTTCACATAGAGAGCAACAGCATCAACAGATAAATACTGTACCATCAGATCAATCTTATGGAGATGGAGTGAACTTTCTCAGTGAGTGA 1584 0.4122 IKRVCHKIYMAASSSAASLLGIREVDQNQMNQQQSSTPSSSTTPAAPPQKKRRNQHGTPCKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARQQPNLNSAIGNQLYGSSSMALAISQVGSINDQNNHQSSDQLCLRAARTGQFDHILQPSLGSSTFKPSQQTMHSSPFFMQDEPNQNQNYQNKPLFQGLLQLADLNNNHNNNNPFCSINSKNNLSEHINNDQGSNFFSIMSDHNQTSTTTNAPSLFSTSLQQSNASISHMSATALLQKAAQMGANSSNNNNNTASSILRSFRGTSSNSDQRPLSAANYDIIFSGNNNNNLQELMNSFVASGNSPIFENGSSSSSAARFSTGFQAYDNNSINREPKLQTVSIGGSDKLSTRDFLGVGQIVRSMSGGVSHREQQHQQINTVPSDQSYGDGVNFLSE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1009 527 Gene3D Classic Zinc Finger 98 186 - -
Lal22g1009 527 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lal22g1009 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lal22g1009 527 MobiDBLite consensus disorder prediction 29 49 - -
Lal22g1009 527 MobiDBLite consensus disorder prediction 252 282 - -
Lal22g1009 527 SUPERFAMILY beta-beta-alpha zinc fingers 62 158 IPR036236 -
Lal22g1009 527 SMART c2h2final6 103 133 IPR013087 -
Lal22g1009 527 SMART c2h2final6 62 84 IPR013087 -
Lal22g1009 527 SMART c2h2final6 138 158 IPR013087 -
Lal22g1009 527 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 10 504 - -
Lal22g1009 527 MobiDBLite consensus disorder prediction 29 56 - -
Lal22g1009 527 Pfam Zinc-finger double-stranded RNA-binding 61 84 IPR022755 -
Lal22g1009 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1009 Lal-Chr22 8709129 8714080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1009 61 495 C2H2 Transcription Factor Family AT2G02080 47.277 1.58e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g1009 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1009 K25870 - gmx:100799389 537.724