Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1008 ATGGAAAACCTTGCTCCTCCAATCTTTCAAAATTCATCCCTCACAACCAATAATAAACGTGATCTCTCTTATCATTTATTTCAACAAACCCCTAACCATACTTGGAATCCAAATTCATGGAATTGGGACTCTAACACTTTTCTCGCCAAACCCTTCACCCAAAACAACAATAATATTATTAATAATAACATCAACGATGAAGAAACTCTTGACTTGAATCTTGGTGGCCCGAATAAGAAACTGCGGTCTGACTCAACTTCTGCTACGGCGTCGTATCCTATGTGTCAGGTTCATAACTGTACGGAAGATCTGTCTACTGCTAAAGATTATCACCGCCGCCATAAAGTTTGTGAGGTTCATAGCAAAGCATCCAAAGCACTTGTTGCTGATCAATTGCAAAGGTTCTGTCAACAGTGTAGCAGATTTCACCCTCTGTCGGAGTTTGATGAAGGGAAGCGGAGTTGTAGACGAAGACTTGCTGGGCATAACCGCCGGAGAAGAAAAACCCAACCAGAAGATGTGACGTCAATGCCAGAGAAGGTGACTACAGGCAATATGGAAATTGTCAACTTGTTGACTGCAATAGCTGGTTCGCAAGGAAACTTTGAGGAAATAAGCAAGATTGGCTCACAAGTTTCGAATAGAGACCATCTTGTTCAAATGCTTAATAGGATGGCTTTACCGGCTGATCTTGCCTCGAAGTTGCTCAATGTTGGTAACTTCAATGAGAAAGGTCATGTGCAAACTTCATCCTATGATCATGACAAACTGAACCAGAATGACTCCGGCCTATTCACTAAGGACCTACTCGCTAGTCTATCGTCTACTCTGTCAACACCTGTTCCTGATGCCACTGCGTCACTCTCTCAAAATTGCAGCCAGAGTAGTGACAGCGAGAAGTCTAGAACTAGCGCTGACCAAATTGTTGAAGCAAATTTACAAACAAGACAACCGCCACGAGAATTCTCTCCAGTTAGAGGAGAAAGAAGTAGTGGTAGTTCCCAGTCACCTGTTGAAGATTCAGACTGCCCAGAAGTTCGAGTTAATTTACCGCTGCAACTATTTAGCTGCTCTCCGGAAGATGAATGCCTTCGAAAAATGGTATCTTCGCAGAAGTATTTCTCATCTGATAGTAGTAACCCTTTGGAAGAGAGGTCACCGTCATCTTCTCCTCCCGCTGTGGAGAAGCAGCTTAATTTGCAGGGTGTGACAAGAGGTCTCAAGCCGGGGAGCTTTTCAATTAGAAGAGAAGTCAATGTAAATAAGGAAGTTAACCAAAGTCTTAGTTTTAATATTTCTCTTGATCACTTCAATGAGTTAAATAGCAGAATCCAACCTGGTTCACTTAAAAGTTTACCAATTCAACCAGGGTATGCATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAACTATTTGGCAAGGATCCTAGCCATTTCCCAGGAACACTGCGAACACAGATTTACAATTGGCTTTCTAGTAGGCCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGTGTGGTCTTATCAGTTTATGCTACAATGTCCTTGGCTTCCTGGGATGAACTAGAAGACAACTTCCTTCAACGTGTTCATTCTCTAATTCAAAATTCAGATTCTGATTTTTGGAGGAATGCAAGGTTTCTAGTTCATTTTGGCAGTCGGTTAGCATCCCATAAAGATGGAAAGATTCGCTTGTGCAACCCATGGAGAAAGTGGAGGTCTCCAGAGTTGTTATCAGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAATTCCAGGCACCAAGATTCACTGCACAGGTACTGACTGTTACACATCGGAGGAAATTATGGGATCTGCATATCATGGTATGACTCATGATAAGATGAAACTGAGTGCTTTTAAAGTTCAGAATGTATCAGGTGTTTTGGGTCGTTGTTTCATTGAGGTAGAAAATGGTTTCAAGGGTGACAGCTTTCCGGTGATTATAGCTGATGCAACCATTTGTAAGGAATTGATACCGCTCGAGTCTGAATTTGATTCGGAGGATGTAAGTGATGAAATTTCAGATGGGCATGAAAATAATTTTGGAAGGCCAAGATCTAGGGAGGAAGCTCTGCACTTCTTGAATGAGCTTGGCTGGCTGTTCCAGAGAGAAAGGTTCTCAGATGTGCATGAGGTGACAGATTATTCGCTGGACAGGTTCAAATTTGTACTCACGTTTGCGGTGGAAAGGAACTGTTGTATGTTAGTAAAAACTCTTCTGGATGTGCTGGTTGATAAACACTTGGAAGGGGAATCGCTGTCAGAGGGTTCAGTGGATATGCTAAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGGCAGTACACAGCCATGGTTGATTTGCTCATCTGCTATTCGTTACCTAGCAAAAGTGTTACATTAAGGAGATATATATTTCCTCCTAATATCGGGGGGCCAGATGGAATTACACCCTTGCACTTGGCAGCGTCCACGCCAAATTCTGAGAGTGTAGTTGACTCTCTAACCAATGACCCACAGGAGATTGGGTTGACGTGCTGGGAATCCCTAGTGGATGCTAATGGGAAGACTCCACATGCCTATGCCACAATGAGGAACAATCATTCTTACAATGTGCTGGTTACTCGTAAACGTGCTGAAAAACAAAGAGGTCAAGTTTCAGTTACAATTGACAATGAGATTCAGCAACCATCACTGAGAATTGAGCTCAACCGAAGGCAAAGTTACCAACTAGAGCGAGGTAAGAATTCTTGTGCGAAGTGTGTGATTGCAGAAATTCATTCCTACCGGAGAGTTTCTGCTTCACGGGGCTCGATTAAGCGTCCCTTTATCCATTCAGTGCTTGCTGTTGCTGCTGTATGTGTATGTGTTTGTCTGTTCATGCGTGGAACCCCTTCCATAGGCTCAGTTGCTCCCTTCAGATGGGAAAAATTGGATTATGGCACACACTAG 3033 0.4289 MENLAPPIFQNSSLTTNNKRDLSYHLFQQTPNHTWNPNSWNWDSNTFLAKPFTQNNNNIINNNINDEETLDLNLGGPNKKLRSDSTSATASYPMCQVHNCTEDLSTAKDYHRRHKVCEVHSKASKALVADQLQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSMPEKVTTGNMEIVNLLTAIAGSQGNFEEISKIGSQVSNRDHLVQMLNRMALPADLASKLLNVGNFNEKGHVQTSSYDHDKLNQNDSGLFTKDLLASLSSTLSTPVPDATASLSQNCSQSSDSEKSRTSADQIVEANLQTRQPPREFSPVRGERSSGSSQSPVEDSDCPEVRVNLPLQLFSCSPEDECLRKMVSSQKYFSSDSSNPLEERSPSSSPPAVEKQLNLQGVTRGLKPGSFSIRREVNVNKEVNQSLSFNISLDHFNELNSRIQPGSLKSLPIQPGYASSGSDHSPPSLNSDAQDRTGRIMFKLFGKDPSHFPGTLRTQIYNWLSSRPSDLESYIRPGCVVLSVYATMSLASWDELEDNFLQRVHSLIQNSDSDFWRNARFLVHFGSRLASHKDGKIRLCNPWRKWRSPELLSVSPLAIVSGQETSISLKGRNLSIPGTKIHCTGTDCYTSEEIMGSAYHGMTHDKMKLSAFKVQNVSGVLGRCFIEVENGFKGDSFPVIIADATICKELIPLESEFDSEDVSDEISDGHENNFGRPRSREEALHFLNELGWLFQRERFSDVHEVTDYSLDRFKFVLTFAVERNCCMLVKTLLDVLVDKHLEGESLSEGSVDMLNAIQLLNRAVKRQYTAMVDLLICYSLPSKSVTLRRYIFPPNIGGPDGITPLHLAASTPNSESVVDSLTNDPQEIGLTCWESLVDANGKTPHAYATMRNNHSYNVLVTRKRAEKQRGQVSVTIDNEIQQPSLRIELNRRQSYQLERGKNSCAKCVIAEIHSYRRVSASRGSIKRPFIHSVLAVAAVCVCVCLFMRGTPSIGSVAPFRWEKLDYGTH 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1008 1010 ProSiteProfiles Ankyrin repeat region circular profile. 841 862 - -
Lal22g1008 1010 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Lal22g1008 1010 SUPERFAMILY Ankyrin repeat 756 895 IPR036770 -
Lal22g1008 1010 MobiDBLite consensus disorder prediction 374 398 - -
Lal22g1008 1010 ProSiteProfiles Ankyrin repeat profile. 841 862 IPR002110 GO:0005515
Lal22g1008 1010 Gene3D - 736 920 IPR036770 -
Lal22g1008 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 23 1009 - -
Lal22g1008 1010 MobiDBLite consensus disorder prediction 451 474 - -
Lal22g1008 1010 MobiDBLite consensus disorder prediction 280 319 - -
Lal22g1008 1010 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Lal22g1008 1010 MobiDBLite consensus disorder prediction 374 397 - -
Lal22g1008 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 1009 IPR044817 GO:0003677
Lal22g1008 1010 MobiDBLite consensus disorder prediction 280 343 - -
Lal22g1008 1010 SUPERFAMILY SBT domain 93 173 IPR036893 GO:0003677|GO:0005634
Lal22g1008 1010 Pfam SBP domain 95 168 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1008 Lal-Chr22 8673074 8678657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1008 4 1009 SBP-box Gene Family AT1G20980 50.473 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal22g1008 SBP 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1008 - - lang:109360589 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1008 22 8673074 8678657 Lal6g1125 6 8404279 8410373 LSH