LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0978	ATGGAAATAGATTCTTCTACTACCAAGTTGAAGAGTGTTGGGCTAGGAATGGATTTGCCTATCATGCATGATAGTGATAGGTTTGAGCTTGTCCGTGATATTGGGTCTGGAAATTTTGGTGTGGCAAGGCTCATGAGAGACAAGCACACTGAAGAGCTTGTTGCTGTTAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAGAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATATTAACGCCTACGCATTTGGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGAGGTTCGGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGTGACCTGAAGTTGGAGAACACATTGCTAGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCGAAGGTATACTTCTTTCTTCGCACTACTTCTACCCGTAGGTACCTTGAGTCCTCAGTGCTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATACATTGCTCCTGAAGTTCTGCTTAAGAAAGAATACGATGGCAAGATTGCCGATGTGTGGTCTTGTGGTGTCACCTTATATGTCATGTTGGTTGGAGCCTATCCTTTTGAGGATCCCGAAGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCAATTCCCGACTATGTTCATATATCTCCCGAGTGTCGTCATCTGATCTCAAGGATATTCGTTGCTGATCCTTCGAAAGTCAGTTTGTTTTCTTTACTATTTTCATCAAAGATGATATCATTATTCTTTCAATTGGAAACTAATATTGCTTTACAACAGAGAATAAATATTCCTGAGATTAGAAATCATGAGTGGTTTTTGAAGAACCTTCCGGTTGATCTCATGGTTGAGAATACAATGAACAACCAGTTTGAGGAGCCTGATCAGCCAATGCAGAGCATTGAAGAAATCATGCAGATAATTAGTGAGGCTACAATTCCTGCAGCCGGAACTCAATCGTCTCTTAACCAGTATCTCACTGGTAGCTTGGATATTGATGATGACATGGACGAGGACCTAGAGACTGATCCCGACCTCGATATTGATAGCAGTGGAGAAATAGTTTATGCGCTGTAA	1236	0.4126	MEIDSSTTKLKSVGLGMDLPIMHDSDRFELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFGEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKVYFFLRTTSTRRYLESSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECRHLISRIFVADPSKVSLFSLLFSSKMISLFFQLETNIALQQRINIPEIRNHEWFLKNLPVDLMVENTMNNQFEEPDQPMQSIEEIMQIISEATIPAAGTQSSLNQYLTGSLDIDDDMDEDLETDPDLDIDSSGEIVYAL	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal22g0978	411	PANTHER	SERINE/THREONINE-PROTEIN KINASE SRK2E	18	286	-	-
	Lal22g0978	411	PANTHER	SERINE/THREONINE-PROTEIN KINASE SRK2E	312	406	-	-
	Lal22g0978	411	Gene3D	Phosphorylase Kinase; domain 1	9	103	-	-
	Lal22g0978	411	ProSiteProfiles	Protein kinase domain profile.	28	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal22g0978	411	PANTHER	SERINE/THREONINE KINASE	312	406	-	-
	Lal22g0978	411	PANTHER	SERINE/THREONINE KINASE	18	286	-	-
	Lal22g0978	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	143	155	IPR008271	GO:0004672\|GO:0006468
	Lal22g0978	411	SMART	serkin_6	28	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal22g0978	411	ProSitePatterns	Protein kinases ATP-binding region signature.	34	57	IPR017441	GO:0005524
	Lal22g0978	411	Pfam	Protein kinase domain	28	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal22g0978	411	Gene3D	Transferase(Phosphotransferase) domain 1	104	334	-	-
	Lal22g0978	411	SUPERFAMILY	Protein kinase-like (PK-like)	19	286	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0978	Lal-Chr22	8204722	8208003	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0978	27	337	CBL-interacting serine-threonine protein kinases	AT5G25110	39.308	1.24e-63	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Lal22g0978		Pkinase	7.4e-63	CL0016