Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0975 ATGTCGGTGGATGAAATGGATGGTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTGACTCATCCAGAGGATGCTCCAGATCGATGGGAGAAGATTGCGGCTGATGTTCCAGGGAAAACTGTAGAGGAAATTAAACAGCATTATGAGCTCTTGCTTGAAGATATTAACCAGATCGAATCTGGTCGTGTGCCTCTTCCGTCTTATAATTCCTCTTCAGAGGGCTCAGCAAGCCAGGCTAGTGATGAAGGAGCTGACAAGAAGGGTGGCCATCGTAATGGTGAGTCTAATCATGGAACTAAGGCATCGAGATCAGATCAGGAACGGCGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGCAAACAATAGCATTACCCATTGATATAATTATTAAGGTTCCATCTCAAATCCAATTTCCAAAGCGAGGAGTAGCTCAACGGATATTTAAACCACACCCGGAAGAGCGAAGCATGCGATGTGAGACTTGCTTCCCGACAATAACTTTTCATAAACATGGCACATCATTATGTGTCCAAAGGGATTCATTATCTGCTATGGATGCTTCTGGTGACCCCTTTATGAGCCACATAATGAGTTTTGCTAGTTGTAAAATTCTTTCCTTTGTCCTTTTGTCCCTCTCTCTCCCCTTCCGGATAGTAGAGCTGCTTTTCTATATATATGTATATCTTTATATAGCTATTGTTGGTATCAACAAAGTTTCGAACCTTAGAGGTGGTGACATTGGCCATGTGAAAGACCACCAAGGTACCAGGCTGAACTGGTGTCATGCTTATAACATACGCTTTTCAAGTGTATATATGAAATGCACCAATGTGGTGCCGATTCCAAATTCCGAAGTAGCCCTTCTGGAGCCTGTGGGAGGCCCCATCACTAGATTGGATCGAAGGAGATTCCCGATCAGGCCACCCAGGGCAGGTGGGGAGGGTAAAGGGGATCGGGAGTGCAACCGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCACGGAACTTTGTGGTTACAAGAACCCCTACACAAGTGGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACACGATATCACCAGTGTCAATAACGGAGATGTTTCAGCACCACAAGCGCCGATTACTGGTCAAACGAATGGTCCACCAGGCAATTCTACTTGCAAATCAGGCAAACAAGCGCCTCCCGCCTCAACTGGGGTACCAAGCATAGGAATATATGCTGCTCCTACCATCGGACAACCTATAGGAGGACCCTTAGTATCTGCTGTTGGAACCCCGGTGAATCTTCCCGCCCCTGGGCACATGGCATATGGTATCCGAGCCCCGGTTCCTGGTGCGCCGACGAACATTGTTCCTATTAGATACCCTATGCCGCACACTTCTGCTCCGCACAGTGAAAAAAGCAGCATCAAGATTTGA 1500 0.4647 MSVDEMDGSSEWSWEQDKAFESALVTHPEDAPDRWEKIAADVPGKTVEEIKQHYELLLEDINQIESGRVPLPSYNSSSEGSASQASDEGADKKGGHRNGESNHGTKASRSDQERRKGIAWTEDEHRQTIALPIDIIIKVPSQIQFPKRGVAQRIFKPHPEERSMRCETCFPTITFHKHGTSLCVQRDSLSAMDASGDPFMSHIMSFASCKILSFVLLSLSLPFRIVELLFYIYVYLYIAIVGINKVSNLRGGDIGHVKDHQGTRLNWCHAYNIRFSSVYMKCTNVVPIPNSEVALLEPVGGPITRLDRRRFPIRPPRAGGEGKGDRECNRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQAPITGQTNGPPGNSTCKSGKQAPPASTGVPSIGIYAAPTIGQPIGGPLVSAVGTPVNLPAPGHMAYGIRAPVPGAPTNIVPIRYPMPHTSAPHSEKSSIKI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0975 499 CDD SANT 330 368 IPR001005 -
Lal22g0975 499 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lal22g0975 499 CDD SANT 11 58 IPR001005 -
Lal22g0975 499 PANTHER TRANSCRIPTION FACTOR KUA1 7 127 - -
Lal22g0975 499 PANTHER TRANSCRIPTION FACTOR KUA1 329 479 - -
Lal22g0975 499 SMART sant 320 370 IPR001005 -
Lal22g0975 499 SMART sant 8 60 IPR001005 -
Lal22g0975 499 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 329 479 - -
Lal22g0975 499 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 127 - -
Lal22g0975 499 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Lal22g0975 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 330 372 IPR017930 -
Lal22g0975 499 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Lal22g0975 499 Pfam Myb-like DNA-binding domain 331 368 IPR001005 -
Lal22g0975 499 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Lal22g0975 499 MobiDBLite consensus disorder prediction 89 121 - -
Lal22g0975 499 Gene3D - 5 71 - -
Lal22g0975 499 MobiDBLite consensus disorder prediction 69 121 - -
Lal22g0975 499 MobiDBLite consensus disorder prediction 387 422 - -
Lal22g0975 499 MobiDBLite consensus disorder prediction 69 85 - -
Lal22g0975 499 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 328 370 IPR006447 GO:0003677
Lal22g0975 499 ProSiteProfiles SANT domain profile. 330 372 IPR017884 -
Lal22g0975 499 Gene3D - 325 374 - -
Lal22g0975 499 MobiDBLite consensus disorder prediction 1 34 - -
Lal22g0975 499 SUPERFAMILY Homeodomain-like 327 373 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0975 Lal-Chr22 8167626 8173771 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0975 Myb_DNA-binding 4.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0975 - - ccaj:109792793 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0975 22 8167626 8173771 Lal6g1101 6 8161131 8165040 LSH
Lal22g0975 22 8167626 8173771 Lal18g0518 18 4290051 4292847 LSH