Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0889 ATGGTGGAAGTTAGCGACGAATTTTCTGGCACCATTTGTTCAATTTGCTACGAAGCTCTCAAACCAATTACCGAAGACCTTCAATCAATCACTATATGCGGCCACGTTTTCCATGAACTCTGTTTGTTGCAATGGTTCGAGTATTCGAAAGCGAAGAAACACACTTGCCCTGTTTGTAAACAGGGTTGCAAGACCAACGATGCGTGCAGGCTTTATTTTCAATCGGTTGGAGATGGAAATGAAACTGTTCCTTCTCAGAAATCCATTGATTTTCAGGAAGATGCTGGGGTTTTGCGCAAAGAAGTGAAATTGTTGGAGGTTAAGGTTTCAGGGCTTAGTTCTCAATTGGAGAGGCAAGGAAAAGAGTTAGAAGATGTAACCCATGAGCTTTGTGCTTGCAAGAAGCAAGCAAAAATAGATATAGCATTAAAAAATGAGGCTTTGAATGAAAAAGCAACCTTACAATTTCAGCTTCGAAAGAAGTCAGAGGAACTTGAGAAGTCAAGTTTTGAGCGTTTTAGATTAGAAGAACGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTTTCTGATGTGGACCTTGATGAAGAGGACATCCTGAAGCTTGCGACTTTGGGTAACGGAGCAAACAGTAAAGATACAATCGATACATTAAAAAAATCTCTGGTCTTGCGGAACAAGAGTTACAAAGAATTGATGGCCAAGTGCAATCTTCTCGGAAGAGGCGAGGCTCGTTATTGCAAAATGCTTGAGAAGGCTAAAGAGAAGTACACTAAACTGAAGGTGAGGATGCAAGAACTGGAGACAGCTGCTGAAGTAAAAGAGAGTGAATATCTGATGTCTCATAAAGCTTCAAAGAAAGCGAAATTTTCAAAGACTCTTGAAAACAGTATCAATTCTAATTATGATGTATCGCCATCTAGCAAATATTCATCGAAAGAGCAAAGGAAACAAATTTCGACACCCCAATCTGGAAAGGATTTGAGTTTGAACAACGATAGTAGATCTGTACAATTTTTGAATATAGAGAACTCAAATGCTGCTGAAAATAAAGCTCTGAATTTTGGCAGCGGAATTAAAACTACCTTGTCTGTTGATAAAGAGAGAGAATTTGTCTCAATTGATGATGATGATTCAGAATTTACTAAACCTTTGCTTCAACTTCCAAAACACAACTTCAAAGATCAAGACTTGGATGATGTTGCGCTTAGAAAACCCACTCTAGTGAAGCCGGAGGCAACAATGCAAGGAAACTGCAATTTGGCTGAATCTTCAAGAATTGATATTGACATTGAAATTCCTAATATATCTGCTGCTGTAATGGATGATGTGACATTACTATCTAATGTTAACCAAGTTCAGCCCATGATTAACATTAGAAAGGAGTCACCATTAGCACTTTCAAATTCAGGTGGCATATGCTTTTCTGGTGGATTGCTTGGTGCTGATGGAACTAATCGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAACGGCGAATCTACGTCTGCAAAAGGTTCAGGTAATGGGGACTTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATTAAAGCTCTAAGGTCTTCAAATCAAACCTTCTCTGATGGTAAGGAAAACTCTCTATGTTCAAAAAGGTTAAAGTTGGGATCTAAGACAAATGCTTCACAATCCAAAGGGTGCTTGCAGATAGAACACTTCTTTGGTAGGGTCAGTCAGTAA 1731 0.3923 MVEVSDEFSGTICSICYEALKPITEDLQSITICGHVFHELCLLQWFEYSKAKKHTCPVCKQGCKTNDACRLYFQSVGDGNETVPSQKSIDFQEDAGVLRKEVKLLEVKVSGLSSQLERQGKELEDVTHELCACKKQAKIDIALKNEALNEKATLQFQLRKKSEELEKSSFERFRLEERNMALAKELAALKLVSDVDLDEEDILKLATLGNGANSKDTIDTLKKSLVLRNKSYKELMAKCNLLGRGEARYCKMLEKAKEKYTKLKVRMQELETAAEVKESEYLMSHKASKKAKFSKTLENSINSNYDVSPSSKYSSKEQRKQISTPQSGKDLSLNNDSRSVQFLNIENSNAAENKALNFGSGIKTTLSVDKEREFVSIDDDDSEFTKPLLQLPKHNFKDQDLDDVALRKPTLVKPEATMQGNCNLAESSRIDIDIEIPNISAAVMDDVTLLSNVNQVQPMINIRKESPLALSNSGGICFSGGLLGADGTNRFLGKWCKRGQNGESTSAKGSGNGDLIAVGADGRGGRIKALRSSNQTFSDGKENSLCSKRLKLGSKTNASQSKGCLQIEHFFGRVSQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0889 576 Pfam Ring finger domain 12 60 IPR001841 -
Lal22g0889 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 170 IPR013083 -
Lal22g0889 576 Coils Coil 144 164 - -
Lal22g0889 576 Coils Coil 253 280 - -
Lal22g0889 576 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Lal22g0889 576 SMART ringv_2 12 60 IPR011016 GO:0008270
Lal22g0889 576 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 575 - -
Lal22g0889 576 SMART ring_2 13 59 IPR001841 -
Lal22g0889 576 CDD RING-H2 13 60 - -
Lal22g0889 576 MobiDBLite consensus disorder prediction 304 335 - -
Lal22g0889 576 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 575 - -
Lal22g0889 576 SUPERFAMILY RING/U-box 8 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0889 Lal-Chr22 6954415 6959365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0889 460 576 C3H Transcription Factor Family AT4G01270 46.281 2.95e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0889 K11985 - gmx:100812811 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0889 22 6954415 6959365 Lal22g0889 22 6954415 6959365 ECH
Lal6g0995 6 7092132 7097655 Lal22g0889 22 6954415 6959365 LSH