Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0877 ATGCTAAGTTTTGGTTTCAAAACTACTCTTCCTTTTGTATTTATCCAAGTTAATGGTGGTTCTGGTGCAACTAACATGAATGTTGCTGGTAATAATTTGGCAGAAAATATTAGAGATTCTTGGAATAGTATGGTAGAGACAGCAACATATGTTAAACAATTACTTGACCCATATCCAAATCTTAAAGAGGTAGTTATTCCAGTTAGTACTACATTAACCTCTACCCTAATAGCTTGGGTTGTGATGCCTAAGATTTTGAGGAAATTTCACAAATATGCAATGCAAACTCCTGTTTCTGTATTTCCTGGGAACATATCATGGGACCCAGTTCCTTATGATGAAAGCTTTTGGGGTGCCCTGGAAGATCCAGTGAGATATTTAGTTACCTTCATAGCATTCACACAATTTGGTGTAATGGTAGCACCAAAAACTATAGCTTCTCAATATCTTGAACCAGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTGTTTGCACGTACATTGTCTGGTCAAATATTATTTGGGATTGATAGAGAGAAATTGCTCACTTTAGATAAAATATCATCAATTGGTCTAATTTTGATTGGTATGGTGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAGTCTATTGTAACTGTTGGTGGTATAGGAGGAGTTGCTACTGCTTTTGCTGCCAAAGACATTCTAGGCAATGTGTTCAGTGGTTTATCTATGCACTTTTCTAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGTCCAGTAGAGGGTCAAGTGATGGAAATGGGTCTTACTACAACGTCATTGCTGAGTGATGAGAAGTTCCCTGTTATTGTGCCAAACTCATTTTTTTCTAGTGAGGTCATAGTGAACAAGTCCCGTGCTGAATATCGCGCCATTGTTACCAAAATTCCTATTCCAATTGAGTATTTAAGCAAGATTCCGCTGATATCGAATGACGTTAAGAGCATGCTAAGATCAAATGTGAAGGTTTTCTTAGGAACAGATGTTCCATATTGTTTCTTGTCTTGTATAGAAAGCTCAATTGTAGAATTGTCTCTTGGATACAACCTCAAACAAATGCCTAAAGATGAGTTATACTCTGCACAACAAGATATTCTCTTGCAGACAGTTCATATCATTAAGAATCATGGTGTTCCCCTTGGCACCACATTGTAA 1212 0.3779 MLSFGFKTTLPFVFIQVNGGSGATNMNVAGNNLAENIRDSWNSMVETATYVKQLLDPYPNLKEVVIPVSTTLTSTLIAWVVMPKILRKFHKYAMQTPVSVFPGNISWDPVPYDESFWGALEDPVRYLVTFIAFTQFGVMVAPKTIASQYLEPAWRGAVILSFVWFLHRWKTNVFARTLSGQILFGIDREKLLTLDKISSIGLILIGMVALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMHFSKPFSIGDTIKAGPVEGQVMEMGLTTTSLLSDEKFPVIVPNSFFSSEVIVNKSRAEYRAIVTKIPIPIEYLSKIPLISNDVKSMLRSNVKVFLGTDVPYCFLSCIESSIVELSLGYNLKQMPKDELYSAQQDILLQTVHIIKNHGVPLGTTL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0877 403 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 34 402 - -
Lal22g0877 403 Pfam Mechanosensitive ion channel 196 397 IPR006685 GO:0016020|GO:0055085
Lal22g0877 403 Gene3D - 254 302 IPR023408 -
Lal22g0877 403 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 154 237 IPR011014 GO:0016020
Lal22g0877 403 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 34 402 - -
Lal22g0877 403 SUPERFAMILY Sm-like ribonucleoproteins 238 303 IPR010920 -
Lal22g0877 403 Gene3D - 154 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0877 Lal-Chr22 6820483 6825276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0877 34 402 Mechanosensitive Ion Channel Family AT4G00290 65.041 5.98e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0877 K22047 - gmx:100814954 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0877 22 6820483 6825276 Lal18g0486 18 4028930 4034303 LSH