Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0859 ATGGGTTTTCCGGTGGGTTACGCGGAGGTTTTCTTCCCGAACCTCTTCTTAAAAACCCTCACCTTCATCGGCTTCCTCCGAAACCTCGTATTCATCCTCTTCCACTACCTAGGAATCTCCGAATTCCCTGAAACCGGCGTCGTATGGCCCGAACCCAACAACAACAACCTTCGAATCTCCGATACCATAAAACCATCCTTCTCTGCCCTCCTCATCCGTGAACTCCTTCCTGATATTCAATTCTCCGACCTTGATTCCTGTAGCGCCGCCGTGACGGCGGCGGAGAGTGGATGCGCGGTGTGCTTGTACGAGTTTTGTGATGACGATAAGATACGGTGTTTGAGGAACTGCAAGCACATTTTCCATCGGGATTGTGTGGACCGTTGGATTGATTATGATCAGAAGAGTTGTCCTCTTTGTAGGATCCCATTTGTACCTGACGATATGATTGATGATTTTAATCAACGGCTTTGGGTTGCTTCTGGTGGTACTGAGTTCTATGCCGGATACACTTCCTTATGA 522 0.4847 MGFPVGYAEVFFPNLFLKTLTFIGFLRNLVFILFHYLGISEFPETGVVWPEPNNNNLRISDTIKPSFSALLIRELLPDIQFSDLDSCSAAVTAAESGCAVCLYEFCDDDKIRCLRNCKHIFHRDCVDRWIDYDQKSCPLCRIPFVPDDMIDDFNQRLWVASGGTEFYAGYTSL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0859 173 PANTHER BRH1 RING FINGER PROTEIN 1 170 - -
Lal22g0859 173 SUPERFAMILY RING/U-box 97 148 - -
Lal22g0859 173 ProSiteProfiles Zinc finger RING-type profile. 98 141 IPR001841 -
Lal22g0859 173 Pfam Ring finger domain 98 141 IPR001841 -
Lal22g0859 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 148 IPR013083 -
Lal22g0859 173 SMART ring_2 98 140 IPR001841 -
Lal22g0859 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0859 Lal-Chr22 6567855 6568376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0859 1 164 C3H Transcription Factor Family AT1G63840 43.452 1.37e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0859 K16281 - gmx:100790975 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0981 6 6960198 6960710 Lal22g0859 22 6567855 6568376 LSH
Lal6g0981 6 6960198 6960710 Lal22g0859 22 6567855 6568376 PCT
Lal22g0859 22 6567855 6568376 Lal6g0981 6 6960198 6960710 PCT