Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0852 ATGACAGGGGATGGTGATGGTGTTATTGTAGAAAGCGTTGGTGGTGTGGTTCAAGCGTCGTACTACAAGATTCGGTGTCGTTTCGAGGAGTTGCTTTGCAGATTGTGGGGCGAGATCTGTGTTTGTTCTAAATCCCTTCCACCAATGCTAGGTGATGGTAGTAATGTGGATTTGTATAAGCTGTTCATGGTGGTGAAGGGGAAAGGTGGATATGATGTTGTTTGTGAGAGTAAACTGTGGGATTTGGTTGCTGAAGAGTCCGGGTTGGGTTCCAGTGTGGGTTCATCGGTGAAACTGGTTTATTGTAAGTATTTGGGTGCATTGGATGCATGGTTGAAGAAGGTTGCTGATAGTAAGGTGGCTGAGTGTGGGTTGGTGGATGATCGGGATAAGTTCGGGAAGCAGTTGATGGAGTTGCAGGCTGAGGTTAAAGGGTTGTTTTTAGATTATGGGGATAAAAAGTGTGTGGAGAAATTGAAGGGTGAGTTTGACGGCAAGGGTAAGGATGGGAGGAAGTTGTGTGTGAAGAAAGGAGTTCGGAAAGGAAGAAATCGTGATGTGGAAATGATGGACTGTGTGATGAATGAACATAGTGATGGGATGACAGTAACCGGAGAGGTTGATGGAGGGAAATTGTCTGCGAAGCTGGAGTTTGGGGTTCATGTGTCTGACGGTGAGAATAGCACGGTTGGATTGGTGAGTGGAGGCGAGAAGAGTGATGTCGAAGATGGTGGCTTGATGTTGGATATATGTGGTGGTAATGGAGTCAGTTCTGGTCATAAGAGGAAGAGAAAGTCTATGCCGAGTTTGCTTAGTTGGGTTACCAGCATAGCGAAGAATCCTGGTCATCCTGCAGTTGGCTCATTACCTGATAAGTCGAAGTGGAAGTCTAATAATAATAATCAGGAGGCCTGGAAGCAAGTTTTGTCCTTTCGGGAGGCTGTATTTTATAAAAGACATTTTGATTCAAGCATCGAACAACAAAATTGGCGGATAAGTTACCATTTTGGATTCTCACTTTTATTAGTTACCATCTTGAATGCATTAAATGGATTTTTTTGTGCAAAATGGCAATCCAATCTGCTTTATAGCATTTTTGATGGCTTCTTCCTTTTTGCCCTTTTCGGCCGCCATGGCCATAACGGACGTGGCAGTTCTGCATTGCAAGTGGAGCATCCGGCAATAAGAATAACTCTAAGTCTGATTCAAGATTCTGCAATCTTGCAGGTCGAAAATAAGAATCAGAGAATGCACCCTTTCATGTATGATGATCATAGTGGGGGAAGTTACAATCTTAGAGAGAGGTTGAGATGTGACCAGAGGCTTTTATTGGCAAAAGCTAAAGCAGCTGCTCAAAGCTCTTCAGGTTCATCTAGAGGAAGCAGAGACTTGGACAGAACACCAAGTCCGCATACTAGAGATCGTGTGGAGAAACAGTTGGTTGATTCAGGTATTGATGGATGTCCTGAAGTGCGCACACCTGTTGGGCCAAGTCATCAGGCCAAAGTACCAGAATGGACATGCATAACTTCTGAAAGTGATTCCAAGTGGTTGGGGACCCAAATATGGCCATCACAAAAAGGAAATTCAAGAATTCTTATTGAAAGGGACCCCATAGGAAAGGGAAGACAAGATACTTGTGGTTGCTCAGTACCCGGTTCTGTTGAGTGTGTACGGTTCCACATTGCTGAGAAAAGGGGTAGAGTTAGGCTGGAATTGGGTGGGGCATTTTACCTGTGGAATTTTGATAAGATTGGTGAAGAAGTTAAGGACTTGTGGACAGAGGAAGAAGAGAAGAGATTCAAGGATGTGGTGGGACCGGACCCTCTGCCGGAGGGATATTATTTTTGGGATCATATTTTTAGATCCTTCCCTAAAAAGAGCAGGGCAGATTTAGTTAGCTACTACTTCAACGTCTTTCTTTTGCAGCGAAGAGCATATCAGAATAGGCATACTCCTGAGGACATTGACAGTGATGATGATGAAGCAGAGGATGGACTGAGGAATGTTTTTGGACATCAGACACAGAAATCAGGCCGTTCCATCTTAACCCCAAAAAAGTCGGCAACAAGGAGGAAGAAATAG 2085 0.4417 MTGDGDGVIVESVGGVVQASYYKIRCRFEELLCRLWGEICVCSKSLPPMLGDGSNVDLYKLFMVVKGKGGYDVVCESKLWDLVAEESGLGSSVGSSVKLVYCKYLGALDAWLKKVADSKVAECGLVDDRDKFGKQLMELQAEVKGLFLDYGDKKCVEKLKGEFDGKGKDGRKLCVKKGVRKGRNRDVEMMDCVMNEHSDGMTVTGEVDGGKLSAKLEFGVHVSDGENSTVGLVSGGEKSDVEDGGLMLDICGGNGVSSGHKRKRKSMPSLLSWVTSIAKNPGHPAVGSLPDKSKWKSNNNNQEAWKQVLSFREAVFYKRHFDSSIEQQNWRISYHFGFSLLLVTILNALNGFFCAKWQSNLLYSIFDGFFLFALFGRHGHNGRGSSALQVEHPAIRITLSLIQDSAILQVENKNQRMHPFMYDDHSGGSYNLRERLRCDQRLLLAKAKAAAQSSSGSSRGSRDLDRTPSPHTRDRVEKQLVDSGIDGCPEVRTPVGPSHQAKVPEWTCITSESDSKWLGTQIWPSQKGNSRILIERDPIGKGRQDTCGCSVPGSVECVRFHIAEKRGRVRLELGGAFYLWNFDKIGEEVKDLWTEEEEKRFKDVVGPDPLPEGYYFWDHIFRSFPKKSRADLVSYYFNVFLLQRRAYQNRHTPEDIDSDDDEAEDGLRNVFGHQTQKSGRSILTPKKSATRRKK 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0852 694 MobiDBLite consensus disorder prediction 651 694 - -
Lal22g0852 694 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677
Lal22g0852 694 SUPERFAMILY ARID-like 30 119 IPR036431 GO:0003677
Lal22g0852 694 MobiDBLite consensus disorder prediction 464 481 - -
Lal22g0852 694 MobiDBLite consensus disorder prediction 449 499 - -
Lal22g0852 694 SMART ARID_2 19 109 - -
Lal22g0852 694 SMART ELM2_2 493 544 IPR000949 -
Lal22g0852 694 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 46 329 - -
Lal22g0852 694 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 409 691 - -
Lal22g0852 694 Pfam ARID/BRIGHT DNA binding domain 47 107 IPR001606 GO:0003677
Lal22g0852 694 Gene3D - 17 123 IPR036431 GO:0003677
Lal22g0852 694 MobiDBLite consensus disorder prediction 671 685 - -
Lal22g0852 694 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 46 329 - -
Lal22g0852 694 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 409 691 - -
Lal22g0852 694 SMART bright_3 23 114 IPR001606 GO:0003677
Lal22g0852 694 CDD ARID 27 109 - -
Lal22g0852 694 CDD SANT 593 640 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0852 Lal-Chr22 6483072 6488418 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal22g0852 ARID 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0852 - - lang:109339911 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0972 6 6904322 6909658 Lal22g0852 22 6483072 6488418 LSH
Lal6g0972 6 6904322 6909658 Lal22g0852 22 6483072 6488418 PCT
Lal22g0852 22 6483072 6488418 Lal6g0972 6 6904322 6909658 PCT