Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0842 ATGGCTGTGGCTGATGATACAATCTATGGTAGTTCTTCAGGGTCGGTTCGCAATACCGGGGTTCCTGGAACCATGATCAGTATCACAGAAATTGTAGAGGAGCCTAATCCAAATGTTGTTAATGATACAATCTATGTTGCTGTGGCCAAAGATGTGAAAGATAGTCAATTAAATCTGATATGGGCACTACAGAACTCTAGGGGGAAAAAGATTTGTATCCTTCATGTTCTTGTGCCAGCAGCAAAGATCCCCTTGATGGGAGCGAAATTTCTAGCAAGTTCACTGAAAGAGCAGGAAGTTCAAGCATATCGGGAAATTGAAAGGCAAAGCATGCATAAGACTCTGGATGAATATCTTCGTATCTGTCAACGGATGGGGGTGCGTGCAGAGAAACTGCATATTGAAACGGGTTGCATTGAAAAAGGAATTATAGAACTCATCTCTCAATATAACATTCAGGAGCTTGTTATGGGAGCAGCGTCTAATAAGCATTATTCTAGGAAAATGACGGAGCTCAGATCTAAGACAGCCATCTATGTATGTAAACATGCTCCAACTTCTTGCCGTATACAGTTTATCTGCAAAGGACTCCTTATTCATACAAGGAACCGCAATTCGGATGGAGGTAGTAATGTAGATGTTACAGTTCCTTCAGTGCAGGAAGTGCCAAACTCTGAAGCTGGGAATTTGCCTCAATTGAGATCTCAATCTTTTGAGCTGGGTCAAGATCACTTTGTAAAACTGACTAATCCAGCTCAAGATTTATTTCGTAGAGTACGGTCATCTAATGATGGACATGAAAGGAGCATTGTGTCTGTTTCTTCTCCCGTACGGATGGGTGGAGAAGTAAGTTCTGATGAGTCAGATGGAATGTCAAGACGGAGTCCTTCAATTTCCTCAACACGCTCTCACAATTCTTCACTTGAACCAGCATTGACTCCAAATTTGATTATCGAGGGCAGTGAAAATGCGGTAAAGTTGACCTTGACGAATTTGTCGTTGGATCTTCAAGATTCATCACCTCCTCGTGTACTGGATGGAGGAATGGACGAGACTCTCTATGATCAACTTGAACACTTTATGGCTCAGGCTGAGAATGCTAGGCGGGATGCATATCGTGAAATTGTTAGACGTGGGAAAGCTGAAAAAGAGGCCTTTGATGCTATACGCAAGGCTAAAACTGCTGAAATCTCATATAAGGAAGAGCTGAAACTGAGGAAAGAGTTAGAGGGAGCACTAGAGAAGGAAAAAGAAGAATTTGATAACATGAAGAGTCAGAGAGACAATATCAATGAGGAACTCCAACATGTCCAAGATCATAAGTCGTTACTAGAGAGCCAAATTGCATCAAATGAACTTATGATAAAGGAATTAGAGGAGAAGATTATATCTGCTGTGGATCTATTACGAGACTACAAGAACGAACGAGATGAATTGCAAATACAGCGCGATAACGCATTGAGAGAGGCTGAGGAGTTGAGGAGAACACAAGGAGAGTCCTCAAGCACACAAGTGATTCAATCCTTCTCAGAATTCTCTTTTCTAGAGATTGAAGAAGCAACTCGTAACTTTGACCCAAACCTGAAGATAGGAGAAGGTGGATATGGAAGTATATTTAGAGGCATCATGCGTCATACAGAAGTGGCTGTAAAAATTTTGCACGCTGACAGCATGCAAGGACCCTCGGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGATAAGGCATCCCAATCTTATCACACTCATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTATGAGTTTTTACCCAATGGAAGCCTCGAAGATCGTCTTTGCTGCAAGGATAATACGCCTCCGTTATCATGGCAATCTCGTATTCGCATTGCTGCAGAACTGTGTTCTGCACTCATCTTTATCCATTCAAGTAAACCTCACAGCATAGCGCATGGTGACTTAAAACCATCCAACATTCTCCTTGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCTTGCAGTGACAGTTGTAGTAATAATAATACTCAGTTTTGGAGGACTGATCCAAAGGGAACGTTTGTCTACATGGATCCTGAATTCCTCACTTCGGGGGAACTTACTCCCAAATCTGATGTTTATTCATTTGGAATCGTATTGTTGAGAATATTGACCGGGAGATCAGCCTTGGGAATAGTGAAGGAAGTCAAATATGCATTAGATACTGGAACGTTGAAATCTCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAAGCTGAACGGTTGACTCACTTGGCTTTGAGGTGCTGCGATATGAATCGTGAGAGTCGGCCAGACCTGTATTCAGATGTCTGGAGAATGCTGGAGTCGATGAGGGCTTCTTATGGAGGCTCAAACACCTTCAGACTAGGTTCTCAAGGATTTAACCAACCTCCTTCATGTTTCGTTTGTCCAATCTTCCTGGAAATCATGTCCAATCCACATGTGGCTGCAGATGGTTTTACCTATGAAGCTGAGGCTATAAAAGGATGGCTAGACAGTGGTCATGACACTTCACCAATGACAAATTCTAAGCTTTCACATTCCAATATTGTTCCCAACCGTGCTATTCACTCAGCAATCCAGGACTGGCTTCAAACCCAGTGA 2649 0.4247 MAVADDTIYGSSSGSVRNTGVPGTMISITEIVEEPNPNVVNDTIYVAVAKDVKDSQLNLIWALQNSRGKKICILHVLVPAAKIPLMGAKFLASSLKEQEVQAYREIERQSMHKTLDEYLRICQRMGVRAEKLHIETGCIEKGIIELISQYNIQELVMGAASNKHYSRKMTELRSKTAIYVCKHAPTSCRIQFICKGLLIHTRNRNSDGGSNVDVTVPSVQEVPNSEAGNLPQLRSQSFELGQDHFVKLTNPAQDLFRRVRSSNDGHERSIVSVSSPVRMGGEVSSDESDGMSRRSPSISSTRSHNSSLEPALTPNLIIEGSENAVKLTLTNLSLDLQDSSPPRVLDGGMDETLYDQLEHFMAQAENARRDAYREIVRRGKAEKEAFDAIRKAKTAEISYKEELKLRKELEGALEKEKEEFDNMKSQRDNINEELQHVQDHKSLLESQIASNELMIKELEEKIISAVDLLRDYKNERDELQIQRDNALREAEELRRTQGESSSTQVIQSFSEFSFLEIEEATRNFDPNLKIGEGGYGSIFRGIMRHTEVAVKILHADSMQGPSEFQQEVDVLSKIRHPNLITLIGACPESWTLVYEFLPNGSLEDRLCCKDNTPPLSWQSRIRIAAELCSALIFIHSSKPHSIAHGDLKPSNILLDANLVSKLSDFGICRILSCSDSCSNNNTQFWRTDPKGTFVYMDPEFLTSGELTPKSDVYSFGIVLLRILTGRSALGIVKEVKYALDTGTLKSLLDPLAGDWPFVQAERLTHLALRCCDMNRESRPDLYSDVWRMLESMRASYGGSNTFRLGSQGFNQPPSCFVCPIFLEIMSNPHVAADGFTYEAEAIKGWLDSGHDTSPMTNSKLSHSNIVPNRAIHSAIQDWLQTQ 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0842 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Lal22g0842 882 ProSitePatterns Protein kinases ATP-binding region signature. 530 551 IPR017441 GO:0005524
Lal22g0842 882 PANTHER OS02G0152300 PROTEIN 16 881 - -
Lal22g0842 882 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 57 187 - -
Lal22g0842 882 Coils Coil 354 374 - -
Lal22g0842 882 CDD RING-Ubox_WDSUB1_like 816 857 - -
Lal22g0842 882 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Lal22g0842 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Lal22g0842 882 ProSiteProfiles Protein kinase domain profile. 524 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0842 882 Pfam Protein kinase domain 529 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0842 882 MobiDBLite consensus disorder prediction 257 308 - -
Lal22g0842 882 SUPERFAMILY RING/U-box 809 880 - -
Lal22g0842 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 882 IPR013083 -
Lal22g0842 882 MobiDBLite consensus disorder prediction 290 308 - -
Lal22g0842 882 SMART serkin_6 524 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0842 882 Gene3D HUPs 43 190 IPR014729 -
Lal22g0842 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
Lal22g0842 882 Pfam U-box domain 813 881 IPR003613 GO:0004842|GO:0016567
Lal22g0842 882 Gene3D Phosphorylase Kinase; domain 1 501 596 - -
Lal22g0842 882 CDD STK_N 43 196 - -
Lal22g0842 882 Coils Coil 399 496 - -
Lal22g0842 882 PANTHER U-BOX KINASE FAMILY PROTEIN 16 881 - -
Lal22g0842 882 SUPERFAMILY Protein kinase-like (PK-like) 499 792 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0842 Lal-Chr22 6339758 6346038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0842 10 880 U-box Gene Family AT2G45910 52.005 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal22g0842 Pkinase 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0842 - - gmx:100807515 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0964 6 6804571 6810148 Lal22g0842 22 6339758 6346038 LSH