Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0824 ATGGATAGAGGGGACCAGATGACGTTATCCGGTTCTGCATCTTACTATATGCAAAGAGAGATGCCTGGTTCTGGAACACAACCTGAATTGCATAATTCACCTAATATTCGCCCAATGTCGAATCCGAATTTACCATTTCAATCAACCATTGGGGGTGGTACGCTAGGATCTACATTTCCGATGGATTCTACAGGAATTCAATCTCAGTCGGTCAATGTAGGAGCTCCTTCCGGGGTTCCATCTGGGGAGCCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCATTGACATTGACTCCAAGTCCAAAACCGGCTAGTCATCCTGGAACCTTGACACAAACACAAAGCCAAAAACGAGGTCGAGGTCGCCCAGCTGGGTCTGGGAAGAAACAGCAGCTGGCTTCTGTTGGTCAATTGATGTCTGGTGCAGCTGGAATGAGTTTCACTCCTCATATCATCACCGTTGGAGTTGGAGAAGACATTGCAACAAAAATTATGGCATTTTCTCAGCAAGGCCCTCGAGCTATTTGCATTTTGTCTGCCACTGGTGCTGTATCTACAGTCACACTTCGGCAGCCGTCAACTTCAGGTGGCACTGTCACATATGAGGGGAATTTCGAGATATTGTGCCTATCAGGCTCTTACTTGCTTACTGATGGCGGCGGCGGCTCCCACAATCGAACTGGCGGGCTGAGCATTTCCCTCGCCAGTCCTGATGGCCGTGTCATTGGTGGAGGAATTGGTGGAGTGCTTATTGCTTCAAGTCAAGTTCAGGTGATTCTTGGGAGCTTTATATGGAGTGGATCGAAGGCAAAGAAAATGCGAAAGGAAGCTTCAGAAGGCACAGAAGTTGCTATGGAGTCGGATCAGCAAGCTGTTCATAATCCGGTTGCGGTGAATAGCATGTCCCCGAGTCGAAATTTTACTCCAACCTCATCACCAATCCCTTGGCCTGCGTCGCGCCAAATGGATATGCGAAATTCGCATATCGGCATCGATTTAATGCGTGGGTGA 1035 0.4831 MDRGDQMTLSGSASYYMQREMPGSGTQPELHNSPNIRPMSNPNLPFQSTIGGGTLGSTFPMDSTGIQSQSVNVGAPSGVPSGEPVKRKRGRPRKYGTDGTVSLTLTPSPKPASHPGTLTQTQSQKRGRGRPAGSGKKQQLASVGQLMSGAAGMSFTPHIITVGVGEDIATKIMAFSQQGPRAICILSATGAVSTVTLRQPSTSGGTVTYEGNFEILCLSGSYLLTDGGGGSHNRTGGLSISLASPDGRVIGGGIGGVLIASSQVQVILGSFIWSGSKAKKMRKEASEGTEVAMESDQQAVHNPVAVNSMSPSRNFTPTSSPIPWPASRQMDMRNSHIGIDLMRG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0824 344 MobiDBLite consensus disorder prediction 306 325 - -
Lal22g0824 344 MobiDBLite consensus disorder prediction 1 143 - -
Lal22g0824 344 MobiDBLite consensus disorder prediction 306 330 - -
Lal22g0824 344 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lal22g0824 344 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Lal22g0824 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 312 - -
Lal22g0824 344 Gene3D - 157 298 - -
Lal22g0824 344 CDD DUF296 156 271 IPR005175 -
Lal22g0824 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 312 IPR039605 GO:0003680
Lal22g0824 344 ProSiteProfiles PPC domain profile profile. 150 295 IPR005175 -
Lal22g0824 344 MobiDBLite consensus disorder prediction 99 128 - -
Lal22g0824 344 MobiDBLite consensus disorder prediction 7 76 - -
Lal22g0824 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 271 IPR005175 -
Lal22g0824 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0824 Lal-Chr22 6157946 6164084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0824 1 344 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.233 2.00e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0824 - - gmx:100783475 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0824 22 6157946 6164084 Lal22g0824 22 6157946 6164084 ECH
Lal6g0949 6 6605483 6616587 Lal22g0824 22 6157946 6164084 LSH
Lal22g0824 22 6157946 6164084 Lal18g0502 18 4141632 4143716 LSH
Lal6g0949 6 6605483 6616587 Lal22g0824 22 6157946 6164084 PCT
Lal22g0824 22 6157946 6164084 Lal6g0949 6 6605483 6616587 PCT