Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0822 ATGAACAACAGTAACAGAGGGAGATACCCACCTGGTATAGGTTACGGTCGTGGTAGTGGTGGTGGAGGGTTCAATCAGAACCCTAACCAAAATCAAAACGCTGCGTTTCAATCAAGGAACAATTTTCAGCAGCAGCAGAATCAACAGCAACACTATGTGCAAAGGAATTTGGTTCCGCAGCAGAATCAACAGCAACAGCAACAACAGTGGCTGAGAAGGGCACAGTTGGGTGGTGGTGCTGATTCAAATGTCGTCGACGAGGTCGAAAAGAATGTCCAGAATGAAGCGAATGACTCGAGGGTACCCCTCCTTGTTGCAAATGTTTTATTGTACGGAGTGACACTTGAGAAATTAGGAACTTGTGATAGTTCACAAGATTGGAAGGCAAGACTAAAGGCTCCCCCAGCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAAGAAGAAAGTATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCCAGGGCAAAAAATGGAACAGGCAAAACAGCCGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATACTAATGTTATTCAAGCTGTTATACTGGTCCCTACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTGAAGTTATGGTCACAACAGGTGGCACTAGCTTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGCACTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCCCCGGAGTTCCAACCTTCTATACAGCATCTGATTCAGTTTCTTCCTTCAAACCGTCAAATTCTAATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGATATCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTCGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGTTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGACCTTTTTACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTGAACTTGATCACTTACGAGGATCGCTTTAACTTATATAGGATTGAACAGGAACTTGGCACTGAAATAAAGCAAATTCCACCATTCATTGATCAGGCAGTTTATTGCCGGTGA 1578 0.4094 MNNSNRGRYPPGIGYGRGSGGGGFNQNPNQNQNAAFQSRNNFQQQQNQQQHYVQRNLVPQQNQQQQQQQWLRRAQLGGGADSNVVDEVEKNVQNEANDSRVPLLVANVLLYGVTLEKLGTCDSSQDWKARLKAPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCTMLVMDEADKLLSPEFQPSIQHLIQFLPSNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0822 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 505 IPR027417 -
Lal22g0822 525 Pfam DEAD/DEAH box helicase 176 340 IPR011545 GO:0003676|GO:0005524
Lal22g0822 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 100 - -
Lal22g0822 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 122 525 - -
Lal22g0822 525 SMART ultradead3 170 366 IPR014001 -
Lal22g0822 525 Gene3D - 356 524 IPR027417 -
Lal22g0822 525 Gene3D - 122 355 IPR027417 -
Lal22g0822 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Lal22g0822 525 MobiDBLite consensus disorder prediction 1 33 - -
Lal22g0822 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 352 IPR014001 -
Lal22g0822 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 522 IPR001650 -
Lal22g0822 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 122 525 - -
Lal22g0822 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 4 100 - -
Lal22g0822 525 Pfam Helicase conserved C-terminal domain 377 483 IPR001650 -
Lal22g0822 525 CDD SF2_C_DEAD 363 492 - -
Lal22g0822 525 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Lal22g0822 525 SMART helicmild6 402 483 IPR001650 -
Lal22g0822 525 CDD DEADc_DDX6 153 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0822 Lal-Chr22 6142335 6148220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0822 153 515 Eukaryotic Initiation Factors Gene Family AT3G19760 38.904 3.79e-94 291
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0822 22 6142335 6148220 Lal22g0822 22 6142335 6148220 ECH