Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0820 ATGTCTTTCACTGGAACTTTGGACAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGCATTCCTTATCATAAAAGTTGCTTCAAATGCACCCATTGCAATGGAGTACTTACGTTTAATCTTGTTCCTAAATGGGGTGCTAATGATATGAACACATACTCCTCAATGGATGGTGTCCTCTATTGCAGGACACATTTTGAACAACTTTTCAAGGAATCTGGCAATTTTAGCAAGAATTTTCAAAATGCAAAGTCTTCTGAAAGACACCACGAACTGAATAGGACCCCGAGTAAACTCTCTTCCATGTTTAGTGGAACCTTAGACAAGTGCTCGGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTTTCACATGAATTGCTTTAGGTGTGCTCATGGAGGGTGTCACCTAACACATTCTTCCTATGCTGCTCTAGATGGTGTTCTTTATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTACTTCAAGCTGCTGCACACAGAAGGAATGGTTCTTCTACACCTCCTGAAACAATTGAGTTTCCATCACAAGAGCCATTACCTGAGGACAAAAAAGAAGAACAACAACAAGAAGAAACTTCTTGA 669 0.4006 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCFKCTHCNGVLTFNLVPKWGANDMNTYSSMDGVLYCRTHFEQLFKESGNFSKNFQNAKSSERHHELNRTPSKLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECFHMNCFRCAHGGCHLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHRRNGSSTPPETIEFPSQEPLPEDKKEEQQQEETS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0820 222 Pfam LIM domain 10 76 IPR001781 -
Lal22g0820 222 Pfam LIM domain 117 172 IPR001781 -
Lal22g0820 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 87 - -
Lal22g0820 222 ProSiteProfiles LIM domain profile. 8 79 IPR001781 -
Lal22g0820 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 182 - -
Lal22g0820 222 Gene3D Cysteine Rich Protein 114 181 - -
Lal22g0820 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 142 - -
Lal22g0820 222 PANTHER OS06G0237300 PROTEIN 1 219 IPR045268 GO:0051015
Lal22g0820 222 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal22g0820 222 ProSiteProfiles LIM domain profile. 115 175 IPR001781 -
Lal22g0820 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal22g0820 222 MobiDBLite consensus disorder prediction 188 222 - -
Lal22g0820 222 SMART lim_4 116 168 IPR001781 -
Lal22g0820 222 SMART lim_4 9 72 IPR001781 -
Lal22g0820 222 Gene3D Cysteine Rich Protein 5 113 - -
Lal22g0820 222 MobiDBLite consensus disorder prediction 205 222 - -
Lal22g0820 222 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0820 Lal-Chr22 6128485 6130193 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal22g0820 LIM 2e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0820 - K09377 gmx:100800234 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0940 6 6552340 6553878 Lal22g0820 22 6128485 6130193 LSH
Lal22g0820 22 6128485 6130193 Lal18g0778 18 9625455 9626859 LSH
Lal9g1405 9 15814978 15817874 Lal22g0820 22 6128485 6130193 PCT
Lal1g2023 1 22367185 22369792 Lal22g0820 22 6128485 6130193 PCT
Lal22g0820 22 6128485 6130193 Lal9g1405 9 15814978 15817874 PCT
Lal22g0820 22 6128485 6130193 Lal1g2023 1 22367185 22369792 PCT