Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0802 ATGAATAAGGAAAGGGAAGAAGAAATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAATGCTACTAGTAGGCAAGTAACCTTTTCAAAGAGGCGTAATGGGTTGCTGAAGAAAGCTTTTGAGCTATCAGTTCTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCTCAAAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTAAAAGATACCGCAGGCATGCCAAGGATACTGCAACAACACCCAGATCAGATGAACAAAATATACAGCATTTGAAGCAAGAAGCATCAATCATGTCGAAGAAGATTGACCTTCTTGAAGCTTCAAAAAGGAAACTCTTAGGAGAAGGTTTGGGTTCATGTTCCATTGATGAACTGCAAGAGATAGAAAAACAGTTGGAGAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGGTTTTCAATGAGCAAATTCAGCTACTAAAAGAAAAGGAAAAAGCCTTAGATGCTGAAAATTTCAGGCTCTCTGAGAAGTATGGTATTCATCCAGAGCCAGCAACAAAGGATCAAGGTGGAAATCAACCCCAACCAAGTGAAGAAAGTACTCCTAATAATTCAGATGTAGAGACTAGGTTGTTCATAGGACTTCCAGAAACAAGACCAAGGCGCATTTTTCCAACTCAACCCTTTAGTTAA 696 0.398 MNKEREEEMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSQRGKLYEFASSSMQETIKRYRRHAKDTATTPRSDEQNIQHLKQEASIMSKKIDLLEASKRKLLGEGLGSCSIDELQEIEKQLERSVSNVRARKTQVFNEQIQLLKEKEKALDAENFRLSEKYGIHPEPATKDQGGNQPQPSEESTPNNSDVETRLFIGLPETRPRRIFPTQPFS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0802 231 CDD MADS_MEF2_like 11 86 IPR033896 GO:0000977|GO:0045944
Lal22g0802 231 MobiDBLite consensus disorder prediction 1 25 - -
Lal22g0802 231 Pfam K-box region 92 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0802 231 MobiDBLite consensus disorder prediction 1 15 - -
Lal22g0802 231 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 MobiDBLite consensus disorder prediction 174 231 - -
Lal22g0802 231 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0802 231 MobiDBLite consensus disorder prediction 189 209 - -
Lal22g0802 231 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 Coils Coil 95 115 - -
Lal22g0802 231 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 SUPERFAMILY SRF-like 11 87 IPR036879 GO:0003677|GO:0046983
Lal22g0802 231 PANTHER MADS-BOX PROTEIN SOC1 9 218 - -
Lal22g0802 231 Gene3D - 21 104 IPR036879 GO:0003677|GO:0046983
Lal22g0802 231 PANTHER MADS BOX PROTEIN 9 218 - -
Lal22g0802 231 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 Coils Coil 2 22 - -
Lal22g0802 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lal22g0802 231 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0802 Lal-Chr22 5925645 5939445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0802 9 166 MADS-box Gene Family AT2G45660 75.949 8.05e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g0802 K-box 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0802 - - gmx:100807963 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0802 22 5925645 5939445 Lal22g0802 22 5925645 5939445 ECH
Lal6g0903 6 6248423 6258016 Lal22g0802 22 5925645 5939445 LSH