Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0801 ATGGGTAGAGGGAGAGTTGAGTTGAAGAGGATAGAGAACAAAATCAACCGCCAGGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCATATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGCCTCATCATTTTCTCCAGCAGAGGAAAACTATGTGAATTTGGTAGTGCTGGCATTTCCAAAACTATTGAGCGATACCAACGTTGCTCTTTTACGCCTCAACAAGATGACCATGTAGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTGAAGGCCAAGTATGAGTCTCTTCAAAGGACTCAAAGGCATTTGCTTGGGGAGGATCTTGGACCGTTGAGCATGAAGGAACTTCAGAATCTTGAGAAACAGCTTGAAGGAGCTTTAGCACAAGCTAGACAAAGGAAGACACAAATTATGATTGAACAAATGGAAGATCTTCGCATAAAGGAACGCCATCTTGGAGACATGAATAAATTGCTTAGACTCAAGCTTGAAGCAGAGGGATATGATTTTAAAGCGATGGAAAACTTGTGGAGTTCTACTTCAGGTGTTGGAAGTAGTAGCTTTCCCTTCCAACCTTCTGAAACCAATCCTATGGATTACCAACCAGAACCTTTCTTGCAAATAGGGTACCAACAATATTTTCAAGGTGAGGCATCGAATGTTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGGTTCTTTGA 741 0.4211 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLCEFGSAGISKTIERYQRCSFTPQQDDHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSMKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRIKERHLGDMNKLLRLKLEAEGYDFKAMENLWSSTSGVGSSSFPFQPSETNPMDYQPEPFLQIGYQQYFQGEASNVNVPKSMACETNFMQGWVL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0801 246 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lal22g0801 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 PANTHER MADS BOX PROTEIN 1 228 - -
Lal22g0801 246 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0801 246 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Lal22g0801 246 Coils Coil 120 143 - -
Lal22g0801 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0801 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lal22g0801 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal22g0801 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 228 - -
Lal22g0801 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0801 Lal-Chr22 5915803 5921800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0801 1 246 MADS-box Gene Family AT2G45650 64.822 1.58e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g0801 K-box 6.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0801 K09264 - gmx:100810549 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0801 22 5915803 5921800 Lal22g0801 22 5915803 5921800 ECH
Lal16g1247 16 8711880 8720836 Lal22g0801 22 5915803 5921800 ECH
Lal6g0902 6 6240015 6245525 Lal22g0801 22 5915803 5921800 LSH