Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0793 ATGTCTCATTTCGGAAGGACCGGTCCCCCAGATATCTCCGACACTTATTCTCTTCTCATTCTCAACATCACTTTCCGCACCACCGCTGATGATTTATTCCCTCTGTTCGATAAGTATGGCAAAGTTGTTGATATCTTCATCCCTAAAGATCGAAGGACTGGTGAATCGAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGATGAGGCTTCAAAAGCCGTGGATAGGCTCGATGGAAGAATGGTTGATGGGCGTGAAATAACTGTTCAGTTTGCGAAGTATGGCCCAAATGCTGAGAAGATTCACAAAGGAAGGATTATTGAAACATCCCCAAAACCAAATTCAAGGCACAGGTCAAGGAGCCGCAGTCCCAGGAAGAGGCACCGTGATGACTACCGAGACAGGGACTATAGGAGGAGAAGCCGCAGCAGAAGCTATGATAGATCTGAACGTGACAGATACCGTGGGAGAGACAGAGATTATCGCCGCCGAAGCAGGAGTCGCAGTGCCAGTCCTGATAACAAGAGTCGTAGAAGGGGACGCTATGATGACGAGCGTCGTAGCAGGAGCCCGGTCCGATCTGTGGATAGCCTCTCTCCTGCCCAACATAGTCCTAGTCCTCGAAGGAGTCCTTCCCCAAAGAAGATTATTTCCCCTCAAAGGAGTGCTTCCCCTAGGAAAAGCCCACGGGGTGAAAGTCCTGACAATCGTAGGCATGATAGACGATCTGCTTCACCTCGCAGTGTCTCACCACGCGGTCACCCGGATGCTTCGCGAAGCCCTTCACCTCGAAACTCCAATGGTGATGAATGA 813 0.5006 MSHFGRTGPPDISDTYSLLILNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAEKIHKGRIIETSPKPNSRHRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRSERDRYRGRDRDYRRRSRSRSASPDNKSRRRGRYDDERRSRSPVRSVDSLSPAQHSPSPRRSPSPKKIISPQRSASPRKSPRGESPDNRRHDRRSASPRSVSPRGHPDASRSPSPRNSNGDE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0793 270 MobiDBLite consensus disorder prediction 100 115 - -
Lal22g0793 270 MobiDBLite consensus disorder prediction 100 270 - -
Lal22g0793 270 MobiDBLite consensus disorder prediction 228 247 - -
Lal22g0793 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lal22g0793 270 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 270 - -
Lal22g0793 270 MobiDBLite consensus disorder prediction 193 227 - -
Lal22g0793 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Lal22g0793 270 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Lal22g0793 270 MobiDBLite consensus disorder prediction 127 192 - -
Lal22g0793 270 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 270 - -
Lal22g0793 270 Gene3D - 5 105 IPR012677 -
Lal22g0793 270 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0793 Lal-Chr22 5825893 5830799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0793 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 32.500 5.64e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0793 K12891 - gmx:100778928 332.413