Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0778 ATGGGAAAATTATACAGCTTTCTTTTCTTCTGTTTTATGGCCATGATACCTAGTTTTGATGCTAATGTGAAAGAGGATGAGACTTATTTGCAAGAACATGTGAAGACAATGGATGCATATTGGAAAGAAAAGGCAATAGTTGCTGAAAAGGTTAACAAAGAAGCTTTTTTTCCTGACCCATATGCAGTCTCAGAAAACCTAACCTCTAGTGTTAGCCAAATCATAGTTGGAAGTAAAGGACGTAGGAACTTGAAGGGACAAAAGAAAGGTGCATGCATGGCAACTAACCCTATAGATAGGTGTTGGAGATGTGACCCAAATTGGGAAAAGACACGCCAAAAGCTAGCAGATTGTGTTCAAGGCTTTGGAAGAAACACAGTTGGTGGCAAAGGTGGTCCATTCTATGTTGTCACTGATTCCTCAGACAATGACATGCAGAATCCAAAACCAGGCACTATTCGCCATGCAGTCACAAGAAATGGACCTTTATGGATTATCTTTGGACGTAGCATGGTCATTAGGCTCAACCAAGAGCTTATTATGACAAGTGACAAGACCATTGATGGAAGAGGAGCTGATGTTTATATTTCTGCTGGGGCTGGTATTACAATTCAGTATATCAAGAATGTGATCATTCATGGGCTCAAGATTCATAATATTGTGGTTGGGAGTGGTGGACTTATTAGAAATTCTGAGGACCATTTTGGTTTTAGAACAATGAGTGATGGAGATGGAATTTCTATCTTTGGCTCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAAATGCCAAGATGGGTTGATAGATGCTGTTATGGGATCCACTGCTATTACCATCTCCAATAGTCATTTCACAGATCATAATGAGGTGATGTTGTTTGGTGCTAGTGATGGTTACTCAGGAGATCAAATAATGCAAATCACTTTGGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTCATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAGCACCCAACCATTATCAGTGAGGGTAACAGATTCGTTGCCCCTAACAATATCAATGCTAAAGAGATAACAAAGAGGGATTATGCATCAGAAGAAGTGTGGAAAAACTGGCAATGGAGGTCAATAAAGGATGAGTATATAAATGGAGCATTTTTCAGACAAGCAGGACCAGTTCTCACTAATAGGCCATTCACAAGGAAGGATATGATGTCAGCTAGGCCTGGTTCATATGTAGGAAGGCTTACTCGTTATGCTGGCACCTTGAAATGTAGAGTGGGAATGCCTTGTTGA 1338 0.4051 MGKLYSFLFFCFMAMIPSFDANVKEDETYLQEHVKTMDAYWKEKAIVAEKVNKEAFFPDPYAVSENLTSSVSQIIVGSKGRRNLKGQKKGACMATNPIDRCWRCDPNWEKTRQKLADCVQGFGRNTVGGKGGPFYVVTDSSDNDMQNPKPGTIRHAVTRNGPLWIIFGRSMVIRLNQELIMTSDKTIDGRGADVYISAGAGITIQYIKNVIIHGLKIHNIVVGSGGLIRNSEDHFGFRTMSDGDGISIFGSSNVWIDHVSMRKCQDGLIDAVMGSTAITISNSHFTDHNEVMLFGASDGYSGDQIMQITLAFNHFGKRLIQRMPRCRWGFIHVVNNDYTHWEMYAIGGSQHPTIISEGNRFVAPNNINAKEITKRDYASEEVWKNWQWRSIKDEYINGAFFRQAGPVLTNRPFTRKDMMSARPGSYVGRLTRYAGTLKCRVGMPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0778 445 SUPERFAMILY Pectin lyase-like 96 436 IPR011050 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Lal22g0778 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Lal22g0778 445 PANTHER PECTATE LYASE 18-RELATED 5 445 IPR045032 GO:0030570
Lal22g0778 445 Gene3D - 95 438 IPR012334 -
Lal22g0778 445 SMART amb_all 170 367 IPR002022 -
Lal22g0778 445 Pfam Pectate lyase 180 361 IPR002022 -
Lal22g0778 445 PANTHER PECTATE LYASE 5 445 - -
Lal22g0778 445 Pfam Pectate lyase, N terminus 33 84 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0778 Lal-Chr22 5635125 5637246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0778 5 445 Polysaccharide Lyase AT1G14420 55.435 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0778 K01728 - gmx:100796307 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0778 22 5635125 5637246 Lal22g0778 22 5635125 5637246 ECH