Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0771 ATGCAAAATATGAAGAAGAATCAGCAGAAACAGGTTTTGGTCAATGAAGAATCTAAGAAGGAGCGTCACATTGTGACATGGACTCAAGAGGAGGATGATATACTTAGGGAGCAGATTGGCACACATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACTACAAGACAGTGCAGAAGAAGATGGTATACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCGGAGGAAGACACGCTCTTATGCGAGGCGCAAAAGATATTTGGTAACCGGTGGACTGAAATAGCGAAGGTGGTTTCAGGCAGAACGGATAATGCGGTAAAAAACCGTTTCGCCACATTGTGCAAAAAGAGAGCTAAATGTGAAGCCTTAGCGAAAGAGAACAACACTTCATACATCAATTCTAATAATAAGAGAGTAATTTTACATGAGTATAATACATATGCGGTATCGAAATCAGCTGTAGCTAATAAGATGAGGAGATCTCATATCCCTTATGATGGAGCAGAAAAAATCAGCTTCGGTGAAAGATCACATAAACAGAATGGAACTCCAATATATCAGCAGGGAAGAGCACCATTTGCAGTATTACCTCAAAACTCTGATAATGTGAACAATTTGCCGGATCAGCGCCATGTCTGCAATGTGAAGTTTAGTAGTTATGCCGAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCGAAGATTAGCGCATTGATGCAACAAGCAGAATTACTCAGTTCACTAGCTCTAAAAGTTGATGCAAAGAACATGGATCGAAGTCTTGAAAACACATGGAAGGTTCTTCAAGATTTTATGAATCAAACTAAAGAATCAGACATTCCCAGATATAAAATTCCAGATTTACAGCTTGCAGATCTTAAAGATTTGTTGGAGGACTTAACGAGTAGTACGGAGGGAATCCAAACATGTTCCAGGCAAATGGAAGTGTATGAAGACTCTCTAGGCAGTTCTGAATACAGTACAGAATCAACTCTTCTGCCTAATTCAGCTTGTGAGAATTCGGAACACTCTATACATCAAGATATTGAACTGAAGTCTATTCAAATTGGAGACGAAGGAGGAGTTAGAGGATGTGACCAAGGGGTCCTTTCTAGTGCAACATTGAATCAAGATATATTTCCATCATGCAAGGAGCAGATAAACAATGATGGCATTGTTTCTGCCTTATCAAGTTCAGAGTTCAGTTCCCCTCTTCAAGTGACCCCTCTGTTCAGATCCTTAACTGCAGGAATTCCTAGCCCACATTTTTCAGAAAGTGAAAGGAGCTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCCCTCAACCTAAGAGCCAACACCTCACAACCACCACTCTGCAAAAGAACCCTACTACATAGTTTATATTAG 1422 0.3966 MQNMKKNQQKQVLVNEESKKERHIVTWTQEEDDILREQIGTHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDTLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFATLCKKRAKCEALAKENNTSYINSNNKRVILHEYNTYAVSKSAVANKMRRSHIPYDGAEKISFGERSHKQNGTPIYQQGRAPFAVLPQNSDNVNNLPDQRHVCNVKFSSYAENNKIQGTFLKKDDPKISALMQQAELLSSLALKVDAKNMDRSLENTWKVLQDFMNQTKESDIPRYKIPDLQLADLKDLLEDLTSSTEGIQTCSRQMEVYEDSLGSSEYSTESTLLPNSACENSEHSIHQDIELKSIQIGDEGGVRGCDQGVLSSATLNQDIFPSCKEQINNDGIVSALSSSEFSSPLQVTPLFRSLTAGIPSPHFSESERSFLMKTLGMESPSLNLRANTSQPPLCKRTLLHSLY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0771 473 CDD SANT 26 70 IPR001005 -
Lal22g0771 473 SMART sant 23 72 IPR001005 -
Lal22g0771 473 SMART sant 75 123 IPR001005 -
Lal22g0771 473 SUPERFAMILY Homeodomain-like 23 117 IPR009057 -
Lal22g0771 473 PANTHER TRANSCRIPTION FACTOR MYB88 10 469 - -
Lal22g0771 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Lal22g0771 473 Pfam Myb-like DNA-binding domain 27 87 - -
Lal22g0771 473 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Lal22g0771 473 ProSiteProfiles Myb-like domain profile. 27 70 IPR001005 -
Lal22g0771 473 Gene3D - 77 147 - -
Lal22g0771 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 70 IPR017930 -
Lal22g0771 473 CDD SANT 79 120 IPR001005 -
Lal22g0771 473 Gene3D - 15 75 - -
Lal22g0771 473 PANTHER MYB PROTEIN-RELATED 10 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0771 Lal-Chr22 5578768 5584664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0771 15 322 MYB Transcription Factor Family AT2G02820 62.102 7.17e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0771 Myb_DNA-bind_6 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0771 K09422 - gmx:100807667 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0771 22 5578768 5584664 Lal22g0771 22 5578768 5584664 ECH