Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0770 ATGAATATGGCTTTCTTCCAAGCAAATTTCATGCTACAAACCCCTCATCACCATGATGAACACCAACCTCCACCTTCACTCAACACAATTTTACCAACATGTACACCTCAAGATTATCATGGGGGGCCATCTTTTCTAGGCAAGAGATCCATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGTTAATGCTGAGGAAGATTTCTCTGATGATGGATCACAAGCAAGTGAGAAGAAGAGAAGGCTTAACATAGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGAAACAAGCTTGAACCTGAGAGAAAAATGCACCTTGCAAGGGCTCTTGGGTTGCAACCTAGACAGATTGCTATTTGGTTCCAGAATAGGAGGGCTAGGTGGAAGACAAAGCAGTTGGAGAAAGACTATGATCTTCTTAAGAGACAGTATGATGCTATGAAATCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAACTGAGATATTGGCACTGAAAAGTAGAGAACCAACTGAATCAATAAACCTGAATAAGGAAACAGAAGGATCATGCAGCAATAGAAGTGAAAATAGCTCAGAAATCAAGTTAGATATCTCAAGAACAAAAGCTATTGATAGTCCTATCTCACCACATCTTACTAGCATACCCTTCTTTCCATCATCCTCAACTACTACTAGGCCAACTACTACAGTGACTCAGCTATTTCAAATTGCTTCAAGACCTGAACTTCAATGCCAAAAGATTGACCAAATTACCAAAGAAGAAAGCTTAAGCAACATGTTTTGTGGCATGGATGACCAATCTGGGTTCTGGCCTTGGTTGGAGCAGCAACAATTCAATTGA 858 0.3998 MNMAFFQANFMLQTPHHHDEHQPPPSLNTILPTCTPQDYHGGPSFLGKRSMSFSGIELGEEVNAEEDFSDDGSQASEKKRRLNIEQVKTLEKSFELGNKLEPERKMHLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAMKSDNDALQAQNQKLQTEILALKSREPTESINLNKETEGSCSNRSENSSEIKLDISRTKAIDSPISPHLTSIPFFPSSSTTTRPTTTVTQLFQIASRPELQCQKIDQITKEESLSNMFCGMDDQSGFWPWLEQQQFN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0770 285 MobiDBLite consensus disorder prediction 181 197 - -
Lal22g0770 285 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Lal22g0770 285 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Lal22g0770 285 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Lal22g0770 285 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Lal22g0770 285 SMART HOX_1 76 137 IPR001356 GO:0003677
Lal22g0770 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 285 IPR045224 GO:0003700
Lal22g0770 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 3 285 - -
Lal22g0770 285 SUPERFAMILY Homeodomain-like 70 135 IPR009057 -
Lal22g0770 285 CDD homeodomain 78 134 IPR001356 GO:0003677
Lal22g0770 285 Coils Coil 125 173 - -
Lal22g0770 285 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Lal22g0770 285 Gene3D - 70 139 - -
Lal22g0770 285 MobiDBLite consensus disorder prediction 178 197 - -
Lal22g0770 285 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0770 Lal-Chr22 5549747 5551785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0770 3 285 Homeobox Transcription Factor Family AT1G69780 61.905 7.99e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal22g0770 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0770 K09338 - gmx:100814080 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0770 22 5549747 5551785 Lal22g0770 22 5549747 5551785 ECH