Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0769 ATGTCTAGCAGAAGATCTCGTTCTAGTCAATCTGGTGCTTCAGCTGAGATCACTGATGCTCAAATCACTGATCTCGTTTCCAAGTTACAACAACTTATCCCTGAACTTCGTGCTAGGCGCTCAGACAAGGTTTCATCTGCTAAGGTTTTGCAAGAGACTTGCAACTACATCAAGAACTTGCACAGAGAAGTTGATGATCTAAGTGATCGATTGTCACAACTTTTGGCTAACACAGACTCTAATAGTGCTCAAGCAGCAATTATTAGGAGCATACTAATGTAA 282 0.4113 MSSRRSRSSQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKNLHREVDDLSDRLSQLLANTDSNSAQAAIIRSILM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0769 93 Coils Coil 57 77 - -
Lal22g0769 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Lal22g0769 93 Gene3D - 20 89 IPR036638 GO:0046983
Lal22g0769 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Lal22g0769 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Lal22g0769 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Lal22g0769 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lal22g0769 93 CDD bHLH_AtPRE_like 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0769 Lal-Chr22 5526317 5529125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0769 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 3.08e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal22g0769 HLH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0769 - - gmx:100816720 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0769 22 5526317 5529125 Lal22g0769 22 5526317 5529125 ECH
Lal22g0769 22 5526317 5529125 Lal14g1919 14 18474373 18475557 ECH
Lal22g0769 22 5526317 5529125 Lal12g1447 12 17711612 17713767 ECH
Lal22g0769 22 5526317 5529125 Lal24g1387 24 15272036 15273985 ECH