Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal22g0766 | ATGGCTGATCCTCACGGAACTAATTGTTCTGGTAACAGAGACTTGGACCTGCTTCAATTATCTTTACCGGCAATTGCGTCTCTTAAGAAAGGAGCATATCTGCTGAAGTATGGTCGAAGAGGGAAGCCAAAGTTTTGCCCATTCAGGCTTTCCAATGACGAGTCTGTACTCATATGGTACTCTGGGAAAGAGGAGAAACAACTTAAGCTCAGTACTGTTTCAATGATCATTCCTGGGCAGCGGACTGCAATATTTCGGCGGTATCCTCAGCCTGAAAAGGAATACCAATCATTTTCTCTTATATACAATGATAGGTCCCTAGATGTGATATGTAAGGACAAGGATGAAGCTGAAATCTGGTTTGTTGGACTTAAGGCATTAGTTACTCGATGTAACAATCACAGGCGAGGAAATGAAGCAAGATTTGCAAGTGTGTTATCTGACAGTCCACAAATTTGCTCACTGAGATATACTCCACCAGTTAAACCAGTTGACTCAGGAGATACCATCGGGTTTTCGTTTGACAATTCGTCACATAATACATCAGGAAAACCTTTCTCTGAAATAATTTCATATACTGCAGCTGGCAAGAGTTCCAGTCAAGCTGAATCAATTGCAAATTCATCTTTACCTCCAGGGCCAGTCAATAACTCAAATCTAAATTCTTCATCTGAGCCATTTCGAGAGAGTGTATCTAGTGCTGTAAGTTCATTCACTTCATTGAGCCAGGGTTCTTACCAGGAAGATTTTGATGCTTTAAGTGATGTTTACATTTGGGGAGAAGATATTGGAAATGGAGTGCTTGGTGGTGGTGTGCATAGAGTTGAATCCTTATCTAATTCTGAGATGGATGCATTAATCCCCAAGGCACTGAAATCAAAAGTAGTTCTAGATGTCTATAGTATTGCTTGTGGTTCCAAGCATGCCGTTGTAGTTACTAAGCAAGGAGAGATATTTAGTTGGGGGTATGAATCAGGAGGTAGGCTTGGGCTGGGTGTAGAAGCAAATGTTTCTCACCCTAAGCCCATTGACACTCTTAGCAGTGTGAATATTGAATTAGTAGCTTGTGGGGATTATCATACTTGTGCTATTACATTTGCTGGCGATCTTTACACTTGGGGTGATGGTACTCACAATTCTGGTTTACTTGGGAATGGAAATGAAGTCAGTCACTGGATCCCGAAAAAAGTAAGTGGTGACATGGAGGGTGTACAGATATCATTTGTATCCTGTGGACCTTGGCATACAGCTATGGTGACATCATCTGGCCAGTTGTTTACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCATGGAGATCATAGTAGCACAAATATTCCTCGTGAAGTAGAAACTTTGAAAGGATTGAGAACAACCTGGGTTTCTTGTGGTGTTTGGCACACTGCTTCTGTTGTTCAGGTGATAAATGAATCTATGGAATCTTCAATGCATTCATTCATTGGAAAACTGTTCGCCTGGGGTGATGGGGATGAAGGGCGACTTGGACATGTTGATAAGGAACCCAGACTAGTTCCTGATTGTGTAACGACATTGAATAATGAAAATATTTGTCGAGTGGCTTGTGGCCAAAATCTTACAATTGCATTGACAACCTCAGGACGTGTATACACAATGGGCAGTTCTGCTTATGGACAACTTGGTTGTCCTGCATCTGATGGGAAAGTCCCTGGACGTGTTGAAGGTGAGCTTGCTGACAGTTTTGTAGATGATATTGCATGCGGCTCTTACCATGTTGCAGTCCTCACTTCTAAGGCAGAAGTTTACACCTGGGGAAAGGGTTTGAATGGGCAGTTAGGTCATGGAGACATTGATCACCGGGATAAACCTACACTTGTTCCTTTTTTAAAAGATAAGCAAGTGAAGAGTGTTGCTTGTGGTTCAAATTTCACTGCTGTTATATGTCTTCACAAATGGATATCAAGTGCTGATCATTCTGTGTGTTCTGCTTGTCGTAATCCATTTGGATTCATAAGAAAACGTCGTAATTGTTACAACTGTGGACTAGTGTTTTGCATAGGATGCAGTAGCAGGAAATCTACGAAAGCTTCACTTGCTCCAGATGCCAACAAGCCATTCCGGGTCTGCGATGACTGTTATTCTAAACTGAAGAAAGTTGAAGAATCTATATCCTTAGTTCAAACTCCTACCTCCAGAATTGTGAGTGCAAATGACGCTAGGGCTACTAAATTACGGGTATCGCTATCAACGCTTGCACCTGTTGGTTCTACTGTTCAAGAAGCAAGCAGATACAAAGATCTTCCAAAATTGCATGATAACCATGTTTTTTCAGCTCTGAATGGAAAACTACGGTTGGGGACTCCTCCTATAAAAGCTTCAAATTCCCATTTTAGAACACCAAGGAAGCGCTATTCAATTTCTGTGACTCCTTCTAGAGAGGCTTCTCAATCATCTTCTATTTCACCAAAGTCAGGCACACAACAGTCTTGTACAGATATCCATGATAATTCAAAGCACATGAATGACATTCTAAGTCAAGAAGTTATATGTTTAAGGGCACAGATTGAAGATCTTACTCATAAGTCCAACTTTCTTGAGGCTGAACTTGAGAGGACTTCAAAGCAATTGAAGCAAGTGACTGCAGTAGCTGCTGATGAAGCTGACAAATGTATATCTGCCAAAGAGTTGATAAAAATGTTGACTGCTCAGTTAAAGGAAATGGTGCAAGTGCAAAGGCTGCTTGAAGGACATAATGCTGAATCCATTGCAGACTTATATTCTAAAACAACTGTTAATACTCTAAATCAGTCAATAGAGAAGAGCCAAATGACAAATATTATCACTCCTTCAAATGGATCAAACAGCAGTGCAGCAAATAGAATATTGCCTAATGGCACCAAAACACAAAGTGGAAAGTCAGAATGGGTAGTGCAAGATGAACCAGGCGTATACATAACTTTGTCTTCCTTACCTGGTGATGGTAATGAACTTAAGAGTGTCCGTTTCAGTAGGAGACATTTCACTGAAGAACAAGGTGAAAAGTGGTGGGCTGAAAATGGAACAAAAGTATTGGAGAGGCACAATGTAGTTGCTGTATTAAACTTAAAAACAACAGTCACAAACAATTTCCATGACCCTCTGAACTGA | 3126 | 0.4088 | MADPHGTNCSGNRDLDLLQLSLPAIASLKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWYSGKEEKQLKLSTVSMIIPGQRTAIFRRYPQPEKEYQSFSLIYNDRSLDVICKDKDEAEIWFVGLKALVTRCNNHRRGNEARFASVLSDSPQICSLRYTPPVKPVDSGDTIGFSFDNSSHNTSGKPFSEIISYTAAGKSSSQAESIANSSLPPGPVNNSNLNSSSEPFRESVSSAVSSFTSLSQGSYQEDFDALSDVYIWGEDIGNGVLGGGVHRVESLSNSEMDALIPKALKSKVVLDVYSIACGSKHAVVVTKQGEIFSWGYESGGRLGLGVEANVSHPKPIDTLSSVNIELVACGDYHTCAITFAGDLYTWGDGTHNSGLLGNGNEVSHWIPKKVSGDMEGVQISFVSCGPWHTAMVTSSGQLFTFGDGSFGALGHGDHSSTNIPREVETLKGLRTTWVSCGVWHTASVVQVINESMESSMHSFIGKLFAWGDGDEGRLGHVDKEPRLVPDCVTTLNNENICRVACGQNLTIALTTSGRVYTMGSSAYGQLGCPASDGKVPGRVEGELADSFVDDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDIDHRDKPTLVPFLKDKQVKSVACGSNFTAVICLHKWISSADHSVCSACRNPFGFIRKRRNCYNCGLVFCIGCSSRKSTKASLAPDANKPFRVCDDCYSKLKKVEESISLVQTPTSRIVSANDARATKLRVSLSTLAPVGSTVQEASRYKDLPKLHDNHVFSALNGKLRLGTPPIKASNSHFRTPRKRYSISVTPSREASQSSSISPKSGTQQSCTDIHDNSKHMNDILSQEVICLRAQIEDLTHKSNFLEAELERTSKQLKQVTAVAADEADKCISAKELIKMLTAQLKEMVQVQRLLEGHNAESIADLYSKTTVNTLNQSIEKSQMTNIITPSNGSNSSAANRILPNGTKTQSGKSEWVVQDEPGVYITLSSLPGDGNELKSVRFSRRHFTEEQGEKWWAENGTKVLERHNVVAVLNLKTTVTNNFHDPLN | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal22g0766 | 1041 | SUPERFAMILY | FYVE/PHD zinc finger | 644 | 722 | IPR011011 | - | |
| Lal22g0766 | 1041 | CDD | PH_PLC_plant-like | 22 | 129 | - | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | BRX domain profile. | 966 | 1021 | IPR013591 | - | |
| Lal22g0766 | 1041 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 22 | 1019 | - | - | |
| Lal22g0766 | 1041 | SUPERFAMILY | PH domain-like | 24 | 128 | - | - | |
| Lal22g0766 | 1041 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 302 | 312 | IPR000408 | - | |
| Lal22g0766 | 1041 | Gene3D | - | 481 | 657 | IPR009091 | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 592 | 643 | IPR000408 | - | |
| Lal22g0766 | 1041 | SMART | fyve_4 | 642 | 711 | IPR000306 | GO:0046872 | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 423 | 474 | IPR000408 | - | |
| Lal22g0766 | 1041 | Coils | Coil | 834 | 875 | - | - | |
| Lal22g0766 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 658 | 716 | IPR013083 | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 316 | 367 | IPR000408 | - | |
| Lal22g0766 | 1041 | MobiDBLite | consensus disorder prediction | 203 | 226 | - | - | |
| Lal22g0766 | 1041 | Gene3D | - | 23 | 137 | IPR011993 | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 648 | 710 | IPR017455 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 488 | 536 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 539 | 588 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 593 | 640 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 422 | 469 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 368 | 418 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 316 | 364 | IPR000408 | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 488 | 539 | IPR000408 | - | |
| Lal22g0766 | 1041 | MobiDBLite | consensus disorder prediction | 792 | 827 | - | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 540 | 591 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 299 | 312 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 318 | 334 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 368 | 384 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 409 | 425 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 425 | 439 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 529 | 547 | IPR000408 | - | |
| Lal22g0766 | 1041 | PRINTS | Chromosome condensation regulator RCC1 signature | 587 | 608 | IPR000408 | - | |
| Lal22g0766 | 1041 | Pfam | FYVE zinc finger | 644 | 710 | IPR000306 | GO:0046872 | |
| Lal22g0766 | 1041 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 965 | 1020 | IPR013591 | - | |
| Lal22g0766 | 1041 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 22 | 1019 | - | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 368 | 422 | IPR000408 | - | |
| Lal22g0766 | 1041 | Gene3D | - | 229 | 478 | IPR009091 | - | |
| Lal22g0766 | 1041 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 254 | 315 | IPR000408 | - | |
| Lal22g0766 | 1041 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 409 | 419 | IPR000408 | - | |
| Lal22g0766 | 1041 | MobiDBLite | consensus disorder prediction | 783 | 827 | - | - | |
| Lal22g0766 | 1041 | SUPERFAMILY | RCC1/BLIP-II | 254 | 645 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal22g0766 | Lal-Chr22 | 5500063 | 5508611 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal22g0766 | 964 | 1022 | Major Intrinsic Protein MIP | AT1G31880 | 52.542 | 2.63e-14 | 73.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal22g0766 | - | - | lang:109355968 | 1977.99 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal22g0766 | 22 | 5500063 | 5508611 | Lal22g0766 | 22 | 5500063 | 5508611 | ECH |