Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0754 ATGAGCGATCATTTGGTACTCTTCGTTGACCGTCTCTTGCGCCCTGTCGCCGTTGACCCCGTCGCGCAGCCATCTCCACTCCCTTCCGACCACTCGCCGTCACAAGCCGCGGATCTTGTCGCCGGACCATCCGGATCGGCTCCGCCGGTTAATCATGCCGACGAAGGCGGCTCGGACGGTGGTGATGAGGAGGAGCCGCTGATTCAGATGTCGGAGTGCCGTATTTGTCAGGAAGAGGATGGAGTTTCCAATTTGGAGAGTCCCTGCGCCTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATATGCCATCAGCCTTATCAACCTGGTTATACTGCTCCACCACCCCGTCCAAATCCTGATGAAACTACCATTGATATAGGAGGAGGCTGGACAATATCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCCTGGCAATAGCAGAGGCAGAACGTCAATTCTTGGACGCCGAGTATGATGAGTATACTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCTTGCGACATGCACTCTCTGTCACAGATGGTGATGCTTCTGATGACGACCCGTCCAATTTTTTATCCCTATTCTTGTTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTATATTATGGCTTGGGCAATCAGTATCCTGCAACGTCGACGTCAAAGACAAGAGGCTGCAGCTCTAGCAGCAACACAAGTTGCCTTTGTACTACAATCTGGGCAGCATCGGAGTCTACAGTTTGCAATAGCACCAGGACCCACAGTGCACCCGGAACAAGTGTAG 873 0.5166 MSDHLVLFVDRLLRPVAVDPVAQPSPLPSDHSPSQAADLVAGPSGSAPPVNHADEGGSDGGDEEEPLIQMSECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPDETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYTASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFLSLFLFRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRSLQFAIAPGPTVHPEQV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0754 290 SMART ringv_2 72 119 IPR011016 GO:0008270
Lal22g0754 290 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Lal22g0754 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 281 - -
Lal22g0754 290 MobiDBLite consensus disorder prediction 22 65 - -
Lal22g0754 290 Pfam Protein of unknown function (DUF3675) 124 243 IPR022143 -
Lal22g0754 290 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Lal22g0754 290 CDD RING_CH-C4HC3_MARCH 73 119 - -
Lal22g0754 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 128 IPR013083 -
Lal22g0754 290 Coils Coil 161 181 - -
Lal22g0754 290 SUPERFAMILY RING/U-box 71 123 - -
Lal22g0754 290 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 281 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0754 Lal-Chr22 5396857 5401063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0754 72 148 C3H Transcription Factor Family AT2G37950 35.955 7.01e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0754 - - lang:109359054 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0754 22 5396857 5401063 Lal22g0754 22 5396857 5401063 ECH