Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0753 ATGTTGAATGTTGATATAGTGAGTAACAAGAAAAGGAAGAGATGTGGGAGGATTTTTAGGTTCAAGAACTTTGGTGAAGAAGGGTACCCAGTAATGTTTAGAGGAGCATTTCGTGAGAACGTGAATGCTCTACTTGAATATGCAAATTTGGAGAGTAATGTAGGAATTGGAATGCCAATGTGGTCGTTTCAACTTGAAGTTCATCATCAACCTCCTTTACATATTTTGTTGTTTGTCATTGAAGAATCAATAGAGGCATCACTCAATCGTCATTGCAAGCATTGTCAATACGTTGGGTGGGGAAACAATTTCATTTGCAATAAGAAGTATCACTTTGTGTTACCTTCAAAGGAGGCATTGGCTAATTGCAATAGCTGTGAAGGTTGCTGTAATGATTCATTAACAAGAATGAATAATGGTAAATCCAAATTAATAGAATTTCAAGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGTCATTTGCTATGTGTTAATGGCTTGGAAATGGGTTCCAATTTGGCTGGGAATCAAATTATGGAGTTTTGGAATCGTTTATGTTATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACATCTCACATAAAAGAGGCATGGAACTAAGACTTATGAATGGAATAGCATATGGTGAGCCATGGTTTGGTCGTTGGGGTTACAAATTTGGTCGAGGATGTTTTGGTGTCACTCAATCCATGTACCAAAAAGCCATAGAGGCAATAAGAAGCATGCCACTCTACTTGTTCATACATCACATTTCTAATAATTCTAACCATGACATTCCACTCATATGCTCAAGGTACCAAACACTTTCTGATCAATCTCTAGTGACCCTTGGTGACCTATTTCGTTACATGTTAGAGCTAAGGTCACGTATTCCTTCTGAAACCAACATTTGTTCTTACAAGACAAATGCCTTATTAGTTGAAACCAATTGTCGATGGTCCCCTAAGAGGATTGAAATGGCAACAAGGGTTATTGTTGAGGCATTGAAAAGAACCGAATTTCGATGGATTTCAAGGCAAGAAGTTAGAGACGCTGCTCGTGTGTACATCGGTGACACTGGCTTGCTCGATTTCGTGCTCAAGTCACTAGGAAATCATATTGTGGGAAATTACTTGGTTCGCCGAAGCTTGAATCCGGTGACCAAAGTGTTGGAATATTGCTTAGAAGACATTTCCAATGTGTACCCTTGTCATGAAGGTTTGGTTAGTAATAATAAAGTGAAGGACAAGTACAAGGTTACAAGAGCTCAACTCATGAAAGACATGCTTTATTTGTATAAGTACATTATTGATCAAAAACCAATGATAGGGTCAGGATTTCTCTCAGCTATATCATTGGCTGCTAGGATAATTCTTGACACTAAATATCTTATCAAAGATTACATTGGGGAGGTTCCTTTTCAGGTTGAATTAGCCTCAAATGGGAAATTCAACCTTTATTGTACAATTTTCTTGAGGAACAATGTTGGGTCTAATGAGTATTTCAACAATATAATGCCACCCTATGAGTGTGTCACATTGAAAAGTAGTGCTACAATCAATGACTTGAAGCTAGAGGTTGAAAAGAATTTTAAAGAAATCTATTGGGGATTGAGTAGTTTTGTTGTGGAATCAATTGGAAACTTGAATTATGCTAATGGGACAGAAATGATTTTTGGGCTAGTTGAAGTGGGTGCAAAAATTGTAATAGAGGGTAATTGGCATGGTGACATGAGAATAAACATGATTGAGAAAATATGTGAAACTGACCCTAACAATGGCATAGTGGAGTGCACTTGTGGGACTAATGAAGATGATGGAGAAAGATTAGTCTCTTGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGCTCGCATTCCAAATGATGAAGAAGTTCCTCATATTTTCCTATGCAAGAGGTGTGAACAAGAAATTGTTCAGTTCCCTTCCTTTCCATAG 1971 0.376 MLNVDIVSNKKRKRCGRIFRFKNFGEEGYPVMFRGAFRENVNALLEYANLESNVGIGMPMWSFQLEVHHQPPLHILLFVIEESIEASLNRHCKHCQYVGWGNNFICNKKYHFVLPSKEALANCNSCEGCCNDSLTRMNNGKSKLIEFQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMEFWNRLCYGLQARKVSLNDISHKRGMELRLMNGIAYGEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLFIHHISNNSNHDIPLICSRYQTLSDQSLVTLGDLFRYMLELRSRIPSETNICSYKTNALLVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARVYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVSNNKVKDKYKVTRAQLMKDMLYLYKYIIDQKPMIGSGFLSAISLAARIILDTKYLIKDYIGEVPFQVELASNGKFNLYCTIFLRNNVGSNEYFNNIMPPYECVTLKSSATINDLKLEVEKNFKEIYWGLSSFVVESIGNLNYANGTEMIFGLVEVGAKIVIEGNWHGDMRINMIEKICETDPNNGIVECTCGTNEDDGERLVSCDICEIWQHTRCARIPNDEEVPHIFLCKRCEQEIVQFPSFP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0753 656 Pfam PHD-finger 601 647 IPR019787 -
Lal22g0753 656 ProSitePatterns Zinc finger PHD-type signature. 601 645 IPR019786 -
Lal22g0753 656 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 656 - -
Lal22g0753 656 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Lal22g0753 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 653 IPR013083 -
Lal22g0753 656 CDD PHD_MMD1_like 600 645 - -
Lal22g0753 656 SMART PHD_3 600 646 IPR001965 -
Lal22g0753 656 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0753 Lal-Chr22 5390788 5394809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0753 10 656 PHD Transcription Factor Family AT5G22260 50.820 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal22g0753 PHD 4.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0753 - - gmx:100780210 1141.33