Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0747 ATGGCATCTGTTCCAGAAGTTTCCGAAATCACCTCTCTGTTTGAAAGGTTAGTGAGAAACAGAGACATGTCTATGTTCATTCCCTTCATCCTTGGCTTCTCAGGGAGAAATAACGAAGACCCAGTTCATGAAACTGAAGATAATGAACGTTCCCAAAGTCAAAGAATCATCTTGGTGAACCCCTTTACACAAGGGATGGTAGTGATTGATGGTGCTTCAAGCCTTGAGAACCTGTTTCGTGAACTTGGAAGTAGCAAAATTGGGCACCCACCAGCTTCAAAAGAATCAGTTGAGGCCATGCCAAGTGTGGAAATTGAAGAAAGTGATGATCTTGGAGAATGTGTGGTTTGTTTGGAGGAGTTTGAAGTTGGTGGGGTGGCAAAGGTTATGCCCTGTAATCATAAATTTCACTCTAATTGCATTGAGAAGTGGCTTGGGATTCATGGGAACTGCCCTGTTTGTAGATATGAGATGCCTGTTGAGGAGAAAGATGGTGGCAGGAAAAGTGATGATGAAGGAGGTGAGAGAAGGAGGGTTGGTGGTGGTGAAGTTTGGATTAGTTTTTCTATTAATAGAGGTAGTAGAAGAAGCCATAATGCAAATGGATCTAATTTTACTGATTCCAGTTATAATTCATCTAGTCCTAGTGATTCTTCTGAAGTAGAGGACTAG 672 0.4182 MASVPEVSEITSLFERLVRNRDMSMFIPFILGFSGRNNEDPVHETEDNERSQSQRIILVNPFTQGMVVIDGASSLENLFRELGSSKIGHPPASKESVEAMPSVEIEESDDLGECVVCLEEFEVGGVAKVMPCNHKFHSNCIEKWLGIHGNCPVCRYEMPVEEKDGGRKSDDEGGERRRVGGGEVWISFSINRGSRRSHNANGSNFTDSSYNSSSPSDSSEVED 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0747 223 SMART ring_2 114 154 IPR001841 -
Lal22g0747 223 Pfam Ring finger domain 113 155 IPR001841 -
Lal22g0747 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 161 IPR013083 -
Lal22g0747 223 PANTHER - 9 169 - -
Lal22g0747 223 SUPERFAMILY RING/U-box 102 160 - -
Lal22g0747 223 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Lal22g0747 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 169 - -
Lal22g0747 223 MobiDBLite consensus disorder prediction 193 223 - -
Lal22g0747 223 CDD RING-H2_PA-TM-RING 113 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0747 Lal-Chr22 5349545 5350216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0747 8 195 C3H Transcription Factor Family AT1G26800 49.206 2.31e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0747 - - lang:109356689 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0747 22 5349545 5350216 Lal22g0747 22 5349545 5350216 ECH