Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0742 ATGGTTATGAATTGTAGGATGGGCAGGGTAAAGCTAAAGATAAAGAAATTGGAGAACACCAATGGGCGTCAAGCAACCTATGCTAAAAGAAAGAATGGAATCATTAAGAAAGCTTCTGAATTATCTGTACTGTGTGACATTGATATTATACTTCTCATGTTCTCACCAACTGGAAAACCTTCATTGTGTAGGGGAAAGCGCAGTTTTAAGGATAAAAATGTTATCTCGAAAATACAAGAATTTGATAAAAACATTCCAATGAATTGCAACAGGAAGTTGGAGAGCCTTGAAGCATTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAATGTACAAGAATTTTTGGGTACAAGTATCCCCTCACCTTATAGCCAGTGGACTGACCTTGGTAAAATCAGTAATGTGGAACAATTGGAACAAATGGAAAATTCACTCAAGGAATCACTTAATCAAATTCGATCTCGTAAGGAAAATATGCAAAAGCAACAACTTGCATCACTGCAATGTAATAACCAGTTCAATGAAATGCATAATCCCTTCAGAATGAGTGATGACCAGCATCTCCAATCTCTATCATGGATTGCAAATGGTGAAAACCAAAATGTGGTTTTACCTGAAGACTCAAAATTGTTTCACCATAGAGATATGGATGGCTCTGCAAACTCATCTTTTGGAAGTTATGCAAGTTATCTTGGCTCGGGTAACAAAACCGATATTTCGAATTCTGGGCAAGAAAACTGTGTCCCTAGTGACTTGAGCAGCACTGCTCCTGTGAGGCTACAATTAAATGGGAAGTTTCAATACCAACCATACAATTTTAATTTACTGAATGATATGAAGTCACAACCTGCAGCAGAGATGAATCCACATGAAAACAATGTAGATTATCATGTGAATGGAAGATTCGACACGCCTAAGCCTGGTTATGACTCTAACCATCATAATTGGACTTCCACCTCAGGTCCTTGTGCTGCTACAATGTTTGATGAGTATTTGTTTGGCCAGGCCAGTTTTCCTCAGGTTCATTTTGGCTTTACATAG 1044 0.3774 MVMNCRMGRVKLKIKKLENTNGRQATYAKRKNGIIKKASELSVLCDIDIILLMFSPTGKPSLCRGKRSFKDKNVISKIQEFDKNIPMNCNRKLESLEALKKTFKKLDHDVNVQEFLGTSIPSPYSQWTDLGKISNVEQLEQMENSLKESLNQIRSRKENMQKQQLASLQCNNQFNEMHNPFRMSDDQHLQSLSWIANGENQNVVLPEDSKLFHHRDMDGSANSSFGSYASYLGSGNKTDISNSGQENCVPSDLSSTAPVRLQLNGKFQYQPYNFNLLNDMKSQPAAEMNPHENNVDYHVNGRFDTPKPGYDSNHHNWTSTSGPCAATMFDEYLFGQASFPQVHFGFT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0742 347 CDD MADS 8 60 - -
Lal22g0742 347 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 ProSiteProfiles MADS-box domain profile. 7 59 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 Gene3D - 20 106 IPR036879 GO:0003677|GO:0046983
Lal22g0742 347 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677|GO:0046983
Lal22g0742 347 Coils Coil 136 163 - -
Lal22g0742 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 7 337 - -
Lal22g0742 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 60 IPR002100 GO:0003677|GO:0046983
Lal22g0742 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0742 Lal-Chr22 5323873 5326532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0742 7 340 Type I MADS-box Gene Family AT2G03060 41.710 5.21e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal22g0742 SRF-TF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0742 - - lang:109356063 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0742 22 5323873 5326532 Lal22g0742 22 5323873 5326532 ECH