Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0741 ATGGGTCTTATTGGTGTGCTCTTAGTGAGTCTCTTCTCCATGTTCTCATCTGCTTATGGCTATGGAGGTTGGGTTAATGCACATGCTACCTTCTATGGAGGAAGTGATGCATCAGGGACAATGGGTGGTGCTTGTGGATATGGGAACCTATATAGTCAAGGGTATGGAACAAACACTGCTGCACTAAGCACAGCTTTGTTCAACAATGGTTTAAGTTGTGGGTCATGCTATGAGATTAAGTGTGTGAGTGACCATAAGTGGTGTTTGGCTGGGTCAATTTTGGTGACTGCCACTAATTTCTGTCCACCAAATAATGCATTGCCCAATAATGCAGGAGGTTGGTGTAACCCTCCTCAGCATCACTTTGATCTTGCTCAACCTGTTTTTCTACGCATTGCTCAATATAGAGCTGGGATTGTGCCTGTTGCTTACAGAAGGGTGCCCTGCAGAAGAAGGGGAGGTATAAGGTTCACAATCAATGGTCACTCCTACTTCAACCTTGTCCTGATCACAAATGTTGGTGGTGCTGGTGATGTTCATGCTGTTGCCATAAAAGGTTCCAGAACAGGATGGTCCTCAATGTCAAGGAACTGGGGTCAGAATTGGCAAAACAACAACTATCTCAATGGGCAAACCCTGTCCTTTAAGGTTACCACCAGTGATGGTCGTACTATGGTCTCTTACAATGTTGCTCCAGCTGGCTGGTCCTTTGGCCAAACCTACACTGGTGCCCAATTCCCCTAG 744 0.4597 MGLIGVLLVSLFSMFSSAYGYGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVSDHKWCLAGSILVTATNFCPPNNALPNNAGGWCNPPQHHFDLAQPVFLRIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWSSMSRNWGQNWQNNNYLNGQTLSFKVTTSDGRTMVSYNVAPAGWSFGQTYTGAQFP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0741 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Lal22g0741 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Lal22g0741 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Lal22g0741 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Lal22g0741 247 SUPERFAMILY Barwin-like endoglucanases 8 172 IPR036908 -
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Lal22g0741 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Lal22g0741 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Lal22g0741 247 PANTHER EXPANSIN-A15 6 246 IPR002963 GO:0009664
Lal22g0741 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Lal22g0741 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Lal22g0741 247 PANTHER EXPANSIN 6 246 - -
Lal22g0741 247 SMART dpbb_1 59 144 IPR007112 -
Lal22g0741 247 Gene3D - 12 150 IPR036908 -
Lal22g0741 247 Gene3D - 154 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0741 Lal-Chr22 5320566 5323401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0741 1 246 Expansin Gene Family AT2G03090 81.781 2.32e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0741 - - gmx:100785757 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0741 22 5320566 5323401 Lal22g0741 22 5320566 5323401 ECH
Lal22g0741 22 5320566 5323401 Lal7g1382 7 18878352 18879929 ECH