Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0683 ATGAACCACGAGGAGAAAGTAACCATGGACCTTGTTCCACCTTCTGAGCACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTATGCTTGCGGTTGGGATCCCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGTGGTCATTGCAGCAACCTCTCCTTTCTCAGCACCAGACCTCCATATTCTCCTCAAAATCAAACCATTGATCACACCCTCACTCTCCAGGGATTTTATGGTGATTTCAAAAAGGGTCGAGCATCATCTTCATCTTCATCACCAACTACATCAAACGAATCAGTGTCTCCTAAAGCAGCACCATTTGTTGTGAAACCACCTGAGAAGAAGCATCGCCTCCCATCTGCGTATAACCGTTTCATGAAAGAGGAGATACAACGCATCAAAGCAAGCAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCAGCTGCTAAAAATTGGGCTAGGTTCATTCCACATTCACCAACCAGTGCAGTTTCAGCAATTAAAAATCGTGAATGA 522 0.4598 MNHEEKVTMDLVPPSEHLCYVRCNFCNTMLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPYSPQNQTIDHTLTLQGFYGDFKKGRASSSSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKASNPEIPHREAFSAAAKNWARFIPHSPTSAVSAIKNRE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0683 173 Gene3D High mobility group box domain 97 159 IPR036910 -
Lal22g0683 173 MobiDBLite consensus disorder prediction 85 103 - -
Lal22g0683 173 PANTHER PROTEIN CRABS CLAW 6 168 - -
Lal22g0683 173 MobiDBLite consensus disorder prediction 84 120 - -
Lal22g0683 173 SUPERFAMILY HMG-box 102 155 IPR036910 -
Lal22g0683 173 Pfam YABBY protein 14 157 IPR006780 GO:0007275
Lal22g0683 173 PANTHER PROTEIN YABBY 6-RELATED 6 168 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0683 Lal-Chr22 4862557 4869523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0683 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 64.000 4.29e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal22g0683 YABBY 2.2e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0683 K25796 - gmx:100819079 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0683 22 4862557 4869523 Lal22g0683 22 4862557 4869523 ECH
Lal22g0683 22 4862557 4869523 Lal6g0774 6 5192971 5194376 LSH