Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal22g0616 | ATGATGAAGGTTTTTGTGAAGACTCTGAAAGGAACGCACTTCGAAATTGAAGTGAACCCCTCAGACACGGTTTCTGAAGTGAAAAAAAATATAGAAACTGTTCAGGGAGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGGTACTACCGTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATCATGCTATCAAAGAGTAAGAGCCCATCTGGTGAAGGATCTACTGCAACTGCGCCTTCAGCTAAGGCTCCGCAGACAAGTGCAGTTCCTACTCCAACCTCAGTGTCATCAGCACCTCAAGCTCATGCTGTGACTGGGGCAACACCTCAAGCTGTTACTGCCCCAACACCTGCTCCTGCTTTAGTACCAGTTCCTGCTTCGGCACCAGCTCCTGCACCTACATTGTCCAGCACTGCTGTGCCTGGGACAGATGTATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGCAATTTGGAGGAAACAATTCAGCAAATTGTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTATTGTCCGTGCTCTTCGTGCTGCTTACAACAACCCTGAGAGGGCCGTTGAATATTTGTATTCTGGCATACCAGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTGGAAGCGTACAACCTGGAAACCCTCCAGCTGCTGCTCCACAAGTAGTGCCTGTTACTTCTAGTGGACCTAATGCTAATCCTTTGGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGTGCTGGTGCTGGTGCTGCTGGCTCTTTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTGGGCAAACAAAACCCTCATCTTATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGGGGAAGGTGGCAGTGACGGTGGTGAGGGGAATATATTGGGACAGCTGGCAGGTGCCATGCCACAATCAGTGACTGTCACCCCTGAAGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGACCGTGCAATTGTATTGGAGGTGTTTTTCGCTTGTAACAAAAATGAGGAGCTGGCAGCCAACTACCTTTTAGATCACATTCATGAGTTTGATGAATAA | 1212 | 0.4777 | MMKVFVKTLKGTHFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTVEENKVAENSFIVIMLSKSKSPSGEGSTATAPSAKAPQTSAVPTPTSVSSAPQAHAVTGATPQAVTAPTPAPALVPVPASAPAPAPTLSSTAVPGTDVYGQAASNLVAGSNLEETIQQIVDMGGGSWDRDTIVRALRAAYNNPERAVEYLYSGIPEQAEAPPVARVPGSVQPGNPPAAAPQVVPVTSSGPNANPLDLFPQGLPNVGAGAGAAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPGEGGSDGGEGNILGQLAGAMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHIHEFDE | 403 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal22g0616 | 403 | CDD | Ubl_Rad23 | 2 | 75 | - | - | |
| Lal22g0616 | 403 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 2 | 402 | - | - | |
| Lal22g0616 | 403 | SMART | uba_6 | 359 | 396 | IPR015940 | - | |
| Lal22g0616 | 403 | SMART | uba_6 | 171 | 211 | IPR015940 | - | |
| Lal22g0616 | 403 | CDD | UBA1_Rad23_plant | 165 | 214 | - | - | |
| Lal22g0616 | 403 | Gene3D | - | 164 | 214 | - | - | |
| Lal22g0616 | 403 | SUPERFAMILY | UBA-like | 168 | 220 | IPR009060 | GO:0005515 | |
| Lal22g0616 | 403 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 169 | 212 | IPR015940 | - | |
| Lal22g0616 | 403 | SUPERFAMILY | Ubiquitin-like | 2 | 83 | IPR029071 | - | |
| Lal22g0616 | 403 | SMART | ubq_7 | 2 | 76 | IPR000626 | GO:0005515 | |
| Lal22g0616 | 403 | ProSiteProfiles | Ubiquitin domain profile. | 2 | 80 | IPR000626 | GO:0005515 | |
| Lal22g0616 | 403 | MobiDBLite | consensus disorder prediction | 78 | 124 | - | - | |
| Lal22g0616 | 403 | Pfam | XPC-binding domain | 274 | 330 | IPR015360 | GO:0003684|GO:0006289|GO:0043161 | |
| Lal22g0616 | 403 | TIGRFAM | rad23: UV excision repair protein Rad23 | 2 | 401 | IPR004806 | GO:0006289 | |
| Lal22g0616 | 403 | SUPERFAMILY | XPC-binding domain | 271 | 336 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
| Lal22g0616 | 403 | Gene3D | - | 1 | 81 | - | - | |
| Lal22g0616 | 403 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 356 | 397 | IPR015940 | - | |
| Lal22g0616 | 403 | Pfam | Ubiquitin family | 4 | 77 | IPR000626 | GO:0005515 | |
| Lal22g0616 | 403 | Gene3D | - | 351 | 398 | - | - | |
| Lal22g0616 | 403 | Gene3D | - | 265 | 330 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
| Lal22g0616 | 403 | SUPERFAMILY | UBA-like | 340 | 402 | IPR009060 | GO:0005515 | |
| Lal22g0616 | 403 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23-RELATED | 2 | 402 | - | - | |
| Lal22g0616 | 403 | Pfam | UBA/TS-N domain | 359 | 394 | IPR015940 | - | |
| Lal22g0616 | 403 | Pfam | UBA/TS-N domain | 171 | 209 | IPR015940 | - | |
| Lal22g0616 | 403 | PRINTS | DNA repair protein Rad23 signature | 300 | 322 | IPR004806 | GO:0006289 | |
| Lal22g0616 | 403 | PRINTS | DNA repair protein Rad23 signature | 353 | 369 | IPR004806 | GO:0006289 | |
| Lal22g0616 | 403 | PRINTS | DNA repair protein Rad23 signature | 370 | 384 | IPR004806 | GO:0006289 | |
| Lal22g0616 | 403 | PRINTS | DNA repair protein Rad23 signature | 385 | 400 | IPR004806 | GO:0006289 | |
| Lal22g0616 | 403 | SMART | CBM | 272 | 315 | IPR006636 | - | |
| Lal22g0616 | 403 | CDD | UBA2_RAD23_plant | 355 | 397 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal22g0616 | Lal-Chr22 | 4320830 | 4328218 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal22g0616 | 2 | 75 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 39.189 | 2.06e-09 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal22g0616 | K10839 | - | gmx:100809066 | 592.423 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal22g0616 | 22 | 4320830 | 4328218 | Lal22g0616 | 22 | 4320830 | 4328218 | ECH |