Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0604 ATGGTTCCTATTAATGCAGTTGATTCATGGGAAACAGTGAGGAAGGAAAGTGCATTAAGACCGAAAAGCCTTCTTCACCGGATCAAGCTAACCAGGCGAACCAGCCCAATGTTCATGTCTATCCTGATTGGGCTGCCATGCAGGTACGTTCCTTTTGCCTTAATTTCATTTGCATATTATGGGCCAGGATTCAGCATTCCACCATACTATAACCCAGCTATGGCTTCTGGTCACGCTCCTCACCCATATATGTGGGGTCCACCACAGCATATGATGCCACCATATGGGCCGCCTTATGCAGCAATTTATCCACACGGAGGGGTTTATTCTCATCCCGCAGTTGCTATTGGGCCACATTCACATGGCCTAGGAGTTCCATCTTCACCTGCTGCTGGAAATCCTACAAGTGTGGAGACACCAACCAAAATTTCTGGAAATACTGATAAGGGTTTAATGAAGAAACTGAAAGGGTTTGACGGGCTTGCAATGTCAATAAGAAATGACAATGCTGAAAGTGCAGGACGTGGAGCTGAAAACGTGCTGTCACAGAGTGTGGATACCGAGGGTTCAAGTGATGGAAGTGATGGCAACACTTCAGGGGCCAACCAATCAAGGAAAAGAAGCTGTGAGGGAACACCAACCACTGATCGAGAAGGGAAAACCGAGATACAAGATAATCCAATTTCCAAAGAAACTGCTGCTTCTAGTAAGATGGTGTCAGTTACGCCAATCAGTGTTGCAGGAAAGCTTGTTGGACCTACAGTTTCTTCAGGTATGACCACAACACTGGAGCTGAGGAACCCTTCGGCTGTTAATGCTAAGGCAAAATCCACAAGTGCCCCACAACCGTGTGGAGTTTTGCCTCCTGAAGCTTGGTTACAGGATGAGCGTGACCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGGTCCAGGCTTAGGAAGCAGGCTGAGGCTGAAGAATTGGCACGAAAAGTTGATAACTTGACTGCTGAGAATGTGTCACTGAAATCAGAAATAAATCAGTTGGATGAAAGTTCTGAGAAACTGAGGGTGGAAAATGCTACATTGAGGGAAAAACTGAAAAATGCTCAACTGGGACAAACAGAAGAGGTCATTTTGAACAGCATTGACATTCAAGGGGCTATACCTAGAAGTACAGAAAACTTACTATCAAGAGTTAATAATTCCGGTTCCAACGATAGAACTGAAGAGGATGAGAATGATTATGGTGAGAACAAACCAACAGCTGGGGCAAAGCTGCATCAACTACTGGATAATCATAGAGCTAATGCTGTGGCAGCTAGTTGA 1323 0.4512 MVPINAVDSWETVRKESALRPKSLLHRIKLTRRTSPMFMSILIGLPCRYVPFALISFAYYGPGFSIPPYYNPAMASGHAPHPYMWGPPQHMMPPYGPPYAAIYPHGGVYSHPAVAIGPHSHGLGVPSSPAAGNPTSVETPTKISGNTDKGLMKKLKGFDGLAMSIRNDNAESAGRGAENVLSQSVDTEGSSDGSDGNTSGANQSRKRSCEGTPTTDREGKTEIQDNPISKETAASSKMVSVTPISVAGKLVGPTVSSGMTTTLELRNPSAVNAKAKSTSAPQPCGVLPPEAWLQDERDLKRERRKQSNRESARRSRLRKQAEAEELARKVDNLTAENVSLKSEINQLDESSEKLRVENATLREKLKNAQLGQTEEVILNSIDIQGAIPRSTENLLSRVNNSGSNDRTEEDENDYGENKPTAGAKLHQLLDNHRANAVAAS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0604 440 MobiDBLite consensus disorder prediction 176 209 - -
Lal22g0604 440 MobiDBLite consensus disorder prediction 403 417 - -
Lal22g0604 440 SUPERFAMILY Leucine zipper domain 299 355 IPR046347 GO:0003700|GO:0006355
Lal22g0604 440 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 298 361 IPR004827 GO:0003700|GO:0006355
Lal22g0604 440 CDD bZIP_plant_GBF1 301 349 IPR045314 GO:0003700|GO:0006355
Lal22g0604 440 MobiDBLite consensus disorder prediction 270 289 - -
Lal22g0604 440 PANTHER G-BOX-BINDING FACTOR 3-RELATED 53 440 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lal22g0604 440 MobiDBLite consensus disorder prediction 129 146 - -
Lal22g0604 440 Pfam Disordered region downstream of MFMR 148 275 - -
Lal22g0604 440 Pfam G-box binding protein MFMR 58 114 IPR012900 -
Lal22g0604 440 MobiDBLite consensus disorder prediction 120 149 - -
Lal22g0604 440 Pfam bZIP transcription factor 296 358 IPR004827 GO:0003700|GO:0006355
Lal22g0604 440 MobiDBLite consensus disorder prediction 171 239 - -
Lal22g0604 440 PANTHER G-BOX-BINDING FACTOR 3 53 440 - -
Lal22g0604 440 Coils Coil 309 371 - -
Lal22g0604 440 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 303 318 IPR004827 GO:0003700|GO:0006355
Lal22g0604 440 SMART brlzneu 296 360 IPR004827 GO:0003700|GO:0006355
Lal22g0604 440 MobiDBLite consensus disorder prediction 298 320 - -
Lal22g0604 440 MobiDBLite consensus disorder prediction 210 225 - -
Lal22g0604 440 MobiDBLite consensus disorder prediction 394 424 - -
Lal22g0604 440 Gene3D - 299 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0604 Lal-Chr22 4246271 4252310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0604 58 439 bZIP Transcription Factor Family AT2G46270 47.668 7.68e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal22g0604 MFMR_assoc 3.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0604 K09060 - gmx:778133 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0604 22 4246271 4252310 Lal22g0604 22 4246271 4252310 ECH
Lal6g0669 6 4398563 4403827 Lal22g0604 22 4246271 4252310 LSH
Lal22g0604 22 4246271 4252310 Lal18g0273 18 2239828 2245476 LSH