Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0603 ATGGCATTTATCAAGGCTCAGAAATCAAGGGCTTACTTCAAGAGGTATCAAGTGAAGTTCAAGAGAAGAAGAGATGGCAAGACTGATTACCGAGCTAGGATTCGGTTGATTAATCAGGATAAGAACAAGTATAACACCCCCAAATATCGCTTCGTGACCAACAAGGACATCATTGCTCAAATAACATCTGCTAGCATTGCCGGTGATAATGTCCTTGCTGCAGCTTATGCACATGAACTGCCTCACTTTGGTCTTGAAGTGGGCCTCACAAACTATGCTGCAGCTTACTGCACTGGTCTTCTTCTCGCCCGTAGAGTCCTTAAGACGCTTGAATTGGATGAGGAGTATGAGGGGAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGAAACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACTACTGGAAATCGTGTTTTTGGTGCCCTTAAGGGAGCTTTGGATGGTGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAAAAGAAGGAGCTGGATGCTGAGACCTTGATTGAAGATGAACCTGAGAAATATCAGTCACATTTTAGTGAATATATCAAGCGAGGAATTGAGGCCGATGGACTTGAGGCACTGTACAAAAAGGTTCATGCAGCCATTCGTGCAGATCCCACCGCAAAGGATTCAGGGAAGCAGCCACCAAAGGAGCACAAGAGATACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGCTTGCAAGCTCTGAACTCTGCTGCTGGAGCTGGTGATGATGATGATGAGGATGATGATTGA 852 0.4519 MAFIKAQKSRAYFKRYQVKFKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQITSASIAGDNVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLELDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAETLIEDEPEKYQSHFSEYIKRGIEADGLEALYKKVHAAIRADPTAKDSGKQPPKEHKRYNLKKLTYEERKNKLIARLQALNSAAGAGDDDDEDDD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0603 283 MobiDBLite consensus disorder prediction 229 250 - -
Lal22g0603 283 Pfam Ribosomal L18 C-terminal region 216 269 IPR025607 -
Lal22g0603 283 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 PRINTS Ribosomal protein L5 signature 141 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 CDD Ribosomal_L18_L5e 41 167 - -
Lal22g0603 283 Gene3D - 1 272 - -
Lal22g0603 283 Coils Coil 251 271 - -
Lal22g0603 283 SUPERFAMILY Translational machinery components 11 232 - -
Lal22g0603 283 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 172 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 279 - -
Lal22g0603 283 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 279 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal22g0603 283 Hamap 50S ribosomal protein L18 [rplR]. 14 227 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0603 Lal-Chr22 4241828 4244357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0603 1 273 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 77.055 5.47e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0603 K02932 - gmx:100817746 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0667 6 4389109 4391927 Lal22g0603 22 4241828 4244357 LSH