LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0586	ATGGAAGGTAACTTGAAGTTGGAACAAGTTGGTCTCATCAGTGACCTAATGCAAGGGAAGGAGCTAGCAAAGAAGTTACATGACCTTATGTTCTCATCATCATCATCAACATCTCATGAAACCAAAGAAGTTTTACTTGATAAAATATTTGTGTCTTATGAGAAAGCACTCACCAAACTAAACTGGGAGGCTAATGTGGGAGAGGAAGATACAAAGATCACCATTTTCAAGATGATGGATTCTCCTTGTTCCTTTACAAATGAGAGCCCTAGAGGAGAGGTCTTTAACCAAGAGGTTAAGCACAAAAATGTCTCCAAGAAAAGAAAGACCATGGACAGTTGGACAAAACAAATGAAGGTTTGCCCAGGAACAGTGCTTGATGGGTCTCTAGGTGATGGTTATAACTGGAGAAAATATGGACAGAAAGATATTCTGGGAGCAAAGTTTCCAAGAACATTCAAGTATGTTTCATATGTTTTTTCATCAGGAAAGCTTGTTAGTTTTTGGCATTTGAATATGAAAGACATGGGATATTACAGATGTACACATAGACATGCACAAGGGTGTCTAGCCACAAAGCAAGTGCAAAAGTCAGATGAAGAAACAACATATGAAATAACCTACAAAGGAAGACACACATGCATCCAATCTAGTCATGCAAAAAAGGCATTCCCATCAAAATCAAAGATTTGCATTGGAGAAAATAAACACCACAACCACCAAAAGAAGATAGCACTAGAAGAGAAGAAAATAGAACAACAACAAACTCAGGACACAGCTTTCACTTTTGGCCCAGAGCTTGAAGTTAAAATAGACTTGGAAAACAAGGAAGATATTTTCCCATCATTTTTCTTTCCTTCTCCATCAATAGGGTCAGAAACAATGATTGAAAACCATTTCACAGAAAGCTTTTCTCCTGCATTCTTATCACCATCTACTTCAGAATCAAACATTTTCTGTTTGTCACCATGCAACTTTGGAAGCATTGGACTAGGCCTAAGTGTGCAAACATCAGAATCTGATATCACTGATATAGTGTCAGCCACAACTTCAGTTAACAATTCTCCAATAGCAAACTTGGATGATCTTGATCTCTTCTTTGATAATGTGGATTTTGACACAGATTTCCCAATCAACACTCCTGAATATTTCACTTTATAA	1161	0.373	MEGNLKLEQVGLISDLMQGKELAKKLHDLMFSSSSSTSHETKEVLLDKIFVSYEKALTKLNWEANVGEEDTKITIFKMMDSPCSFTNESPRGEVFNQEVKHKNVSKKRKTMDSWTKQMKVCPGTVLDGSLGDGYNWRKYGQKDILGAKFPRTFKYVSYVFSSGKLVSFWHLNMKDMGYYRCTHRHAQGCLATKQVQKSDEETTYEITYKGRHTCIQSSHAKKAFPSKSKICIGENKHHNHQKKIALEEKKIEQQQTQDTAFTFGPELEVKIDLENKEDIFPSFFFPSPSIGSETMIENHFTESFSPAFLSPSTSESNIFCLSPCNFGSIGLGLSVQTSESDITDIVSATTSVNNSPIANLDDLDLFFDNVDFDTDFPINTPEYFTL	386

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal22g0586	386	SUPERFAMILY	WRKY DNA-binding domain	129	153	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	Pfam	WRKY DNA -binding domain	132	153	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	Pfam	WRKY DNA -binding domain	176	214	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	Gene3D	WRKY domain	124	216	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	Coils	Coil	237	257	-	-
Lal22g0586	386	ProSiteProfiles	WRKY domain profile.	130	212	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	SUPERFAMILY	WRKY DNA-binding domain	176	214	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	SMART	WRKY_cls	130	216	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal22g0586	386	PANTHER	WRKY TRANSCRIPTION FACTOR 41-RELATED	1	153	-	-
Lal22g0586	386	PANTHER	WRKY TRANSCRIPTION FACTOR 41-RELATED	177	379	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0586	Lal-Chr22	4068719	4072127	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0586	1	284	WRKY Transcription Factor Family	AT4G23810	32.602	1.90e-35	130

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lal22g0586		WRKY	8.3e-11	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal22g0586	-		-	aprc:113849885	413.69

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0649	6	4239604	4242756	Lal22g0586	22	4068719	4072127	LSH

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