Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0575 CTGAAAAGGAAAGAAAGAATGGAATCAGGTAGCGTTGATAATAGTCTATCTTCATTGATCATGATGGATGAAGCTGATAATCCACATCAGTTTTCTTCAATCACTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCATGAGCTTCTTGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATCCACCAGGTCTGTGCTTTTTTCAGTTTTACTTCATGGGTTGACTTGGTTCCTCCACTTTTGTTCTTAACTTATGTTGACATGTTGGTACCTTGTTTCTTTGTTTTTAAAGCAAATGGAGTAAAGGGTTGCTCCATGGTGCTTCCAACAATTTTTGTGTGTGCTTCTATTCGTGGTTTTGGTGTAGAGGAACCACACCAATCCATCCCAAACTGGGTGCTCTACTGCGGTGACGATATTTGCCACAATGGACATACCCTTTGTTCAACTTGTAAGACAAGGGTAAACAACCGGTGCCCAACTTGTAGACAGGAACTCGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTCGAACTACCTTGCAGATACAGCTCTCTTGGGTGTCCAGATATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGCAACTTCAGACCTTACAACTGCCCCTACACTGGATCAGACTGCTCTGTTGTTGGGGATATTTCATACCTTGTTACTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACTGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTTCATTTTGAAGCCTTCCAGATTGGTACTGCTCCGGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAGAGAGGCGCGAACCTATGGTTACAGCTTGGAGGTAGGAGGAAATGGGCGTAAACTAACTTACGAGGGCAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTTAGAGACAGTCATGATGGCCTCATTGTATATCGTAACATGGCGCTTTTCTTCTCGGGGGTTGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAACAAAACCCTGAAGATGGTGTGTGCATACCAAATCTGTGTAGCTAG 1182 0.4247 MKRKERMESGSVDNSLSSLIMMDEADNPHQFSSITTKLHSNGPTATSVHELLECPVCTNSMYPPIHQVCAFFSFTSWVDLVPPLLFLTYVDMLVPCFFVFKANGVKGCSMVLPTIFVCASIRGFGVEEPHQSIPNWVLYCGDDICHNGHTLCSTCKTRVNNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPDIFPYYSKLKHESICNFRPYNCPYTGSDCSVVGDISYLVTHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQIGTAPVYMAFLRFMGDEREARTYGYSLEVGGNGRKLTYEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGVDRKELKLRVTGRIWKEQQNPEDGVCIPNLCS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0575 393 Pfam Seven in absentia protein family 173 372 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal22g0575 393 ProSiteProfiles Zinc finger SIAH-type profile. 184 244 IPR013010 GO:0008270
Lal22g0575 393 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 69 - -
Lal22g0575 393 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 139 385 - -
Lal22g0575 393 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 242 372 IPR008974 GO:0005515
Lal22g0575 393 PANTHER UBIQUITIN LIGASE SINAT3 139 385 - -
Lal22g0575 393 PANTHER UBIQUITIN LIGASE SINAT3 5 69 - -
Lal22g0575 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 239 IPR013083 -
Lal22g0575 393 SUPERFAMILY TRAF domain-like 184 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0575 Lal-Chr22 3938584 3941696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0575 4 67 C3H Transcription Factor Family AT2G41980 43.939 3.82e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0575 K04506 - gmx:100792687 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0575 22 3938584 3941696 Lal17g0565 17 4027390 4033243 ECH
Lal22g0575 22 3938584 3941696 Lal21g0569 21 4216807 4221050 ECH
Lal22g0575 22 3938584 3941696 Lal22g0575 22 3938584 3941696 ECH
Lal18g1037 18 13353255 13356666 Lal22g0575 22 3938584 3941696 LSH