LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0574	ATGAGACCTTTGCATGGCGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTCATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATGATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACATGTGTAACAGTTGGGACGACAACAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACGTGCAAGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATTGTCAATGTGCTGACATCATTGGCGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGAATATACTTGATCAAATTGTCATATTTCAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA	1299	0.3749	MRPLHGDRIQVSVRKDQFNEWREHLVESSTHVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNDLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTTMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKYKLDIKVIHQHGSGRFVFWDCQCADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKNILDQIVIFQSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal22g0574	432	Gene3D	-	4	64	IPR012340	-
	Lal22g0574	432	SUPERFAMILY	Nucleic acid-binding proteins	228	354	IPR012340	-
	Lal22g0574	432	PANTHER	RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED	17	303	-	-
	Lal22g0574	432	SUPERFAMILY	Nucleic acid-binding proteins	75	203	IPR012340	-
	Lal22g0574	432	CDD	RPA1_DBD_B_like	113	197	-	-
	Lal22g0574	432	Gene3D	-	213	375	IPR012340	-
	Lal22g0574	432	Gene3D	-	68	206	IPR012340	-
	Lal22g0574	432	PANTHER	REPLICATION FACTOR A 1, RFA1	17	303	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Lal22g0574	432	Pfam	Domain of unknown function DUF223	5	90	IPR003871	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0574	Lal-Chr22	3926505	3929690	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0574	44	362	Core DNA Replication Machinery Family	AT5G08020	23.055	5.40e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal22g0574	-		-	lang:109343677	585.874