Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0569 ATGGGAAGAGCTCCATGTTGTTCTAAAGTTGGGTTACATAAAGGTCCATGGACTCCTAGAGAAGATGCATTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAATGGAAATCCTTACCAAAAAAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGCAGACTAAGATGGATGAACTATCTGAGACCTGATATAAAGAGAGGAAATATCACTCCTGAAGAAGATGATCTTATTATCAGAATGCATTCATTTCTTGGAAATAGGTGGTCTCTTATAGCAGGTAGATTACCTGGACGAACGGATAATGAAATAAAGAATTATTGGAACACGCATCTTTGTAAAAAGATGAGAAATCAAGGAGCAGATATAGAAGAAGAATCTCCGGGTGCCAACAAAAAGAAGAAGAGGAACAGCAGTAGCAAAAAGAAGAACAAGCAAAGGAAGGACAAGAATAACAAAGATACAAATGAAGAGACACAGAAGACAAAAGTTTATTTACCAAAACCTATTAGGGTCAAATCTTTGACTTTTCCAAGAACAGACAGTACCTTCACCCTTGATTCTAATTCAGCTAGTGGTGCATCATCAAGTCAAGAGAATAATAACAAGGTAGAAAGTCCAGAAGGAACAAAAGATGTGATGAACTTAGTTTGTGAAGTTGGTGAAGAAAATGATGGGTTTGATTTTCATGGTGAAGACCATGACATAGTCAATGAATCAGATGTGGTGAAATTCCAACCTTATTTTCCTACAGATCATGGTAATGGAACGTTAGACAAACTCTATGATGAGTACTTTCAGCTCTTGAACATGGAAGATTATTGCCAATATGAATTGGATTTGGATTATTTTGCTGAATCTTTGTTGGTCTGA 873 0.37 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSFLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKMRNQGADIEEESPGANKKKKRNSSSKKKNKQRKDKNNKDTNEETQKTKVYLPKPIRVKSLTFPRTDSTFTLDSNSASGASSSQENNNKVESPEGTKDVMNLVCEVGEENDGFDFHGEDHDIVNESDVVKFQPYFPTDHGNGTLDKLYDEYFQLLNMEDYCQYELDLDYFAESLLV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0569 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal22g0569 290 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 273 - -
Lal22g0569 290 Gene3D - 14 66 - -
Lal22g0569 290 Gene3D - 71 116 - -
Lal22g0569 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal22g0569 290 CDD SANT 16 61 IPR001005 -
Lal22g0569 290 PANTHER MYB TRANSCRIPTION FACTOR 1 273 - -
Lal22g0569 290 SMART sant 66 114 IPR001005 -
Lal22g0569 290 SMART sant 13 63 IPR001005 -
Lal22g0569 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal22g0569 290 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal22g0569 290 MobiDBLite consensus disorder prediction 183 209 - -
Lal22g0569 290 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal22g0569 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal22g0569 290 CDD SANT 71 112 IPR001005 -
Lal22g0569 290 MobiDBLite consensus disorder prediction 134 148 - -
Lal22g0569 290 MobiDBLite consensus disorder prediction 183 208 - -
Lal22g0569 290 MobiDBLite consensus disorder prediction 120 165 - -
Lal22g0569 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0569 Lal-Chr22 3895537 3897771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0569 1 128 MYB Transcription Factor Family AT4G38620 70.312 1.36e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0569 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0569 K09422 - gmx:100101857 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0569 22 3895537 3897771 Lal22g0569 22 3895537 3897771 ECH
Lal6g0627 6 4066090 4067511 Lal22g0569 22 3895537 3897771 LSH
Lal22g0569 22 3895537 3897771 Lal18g0293 18 2429940 2432908 LSH
Lal18g0293 18 2429940 2432908 Lal22g0569 22 3895537 3897771 PCT
Lal22g0569 22 3895537 3897771 Lal18g0293 18 2429940 2432908 PCT