Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0566 ATGAAACCTATTTTTGCTGGGAACTTGGGGTATGATACTCGTCAATCGGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGATCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTACTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTTATGACAAACGAAGGCTGTCCGTAGAATGGGCAAGGGGCGAACGTGGCCGCCATCGTGATGGCTCAAAGCCAAACCAGAGGCCCACAAAAACCCTTTTTGTGATTAACTTCGACCCAATGCGTACTAGAGTTCATGATATAGAAAATCACTTTGAACCTTATGGGAAGATTGTTCATGTCCGAATTCGTCGGAACTTTGCGTTTGTGCAGTTTGAAGCACAAGAAGATGCTACTAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATTCTCTGAGAGATGATAGTGGGAGGGCTGACAATTATGACAGCCCTAGAAGAGGTGGTTATGAGAGATCTCCAAGTCCGGCTTATCGCAGGCGACCAAGTCCTGATTATGGTCGTCCGCGTAGTCCTGTGTATGATAGGTATAATGCAGCAGACAGGCGTAGGAGCCCTGATTATGATAGGCCAAGGAGTCCTGCATATGTTAGGCCAAGGAGTCCTGGATATGGAAGGCACAGGAGTCCTGAATATGGTAGATATCGCAGCCGTTCACCAATACGAAGGCCATGA 762 0.4659 MKPIFAGNLGYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGYDKRRLSVEWARGERGRHRDGSKPNQRPTKTLFVINFDPMRTRVHDIENHFEPYGKIVHVRIRRNFAFVQFEAQEDATKALECTNMSKILDRVVSVEYSLRDDSGRADNYDSPRRGGYERSPSPAYRRRPSPDYGRPRSPVYDRYNAADRRRSPDYDRPRSPAYVRPRSPGYGRHRSPEYGRYRSRSPIRRP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0566 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Lal22g0566 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lal22g0566 253 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 203 IPR029537 GO:0000398|GO:0005681
Lal22g0566 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 58 IPR000504 GO:0003723
Lal22g0566 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Lal22g0566 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 203 - -
Lal22g0566 253 MobiDBLite consensus disorder prediction 204 223 - -
Lal22g0566 253 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
Lal22g0566 253 MobiDBLite consensus disorder prediction 164 253 - -
Lal22g0566 253 SUPERFAMILY RNA-binding domain, RBD 82 166 IPR035979 GO:0003676
Lal22g0566 253 Gene3D - 82 201 IPR012677 -
Lal22g0566 253 SMART rrm1_1 92 158 IPR000504 GO:0003723
Lal22g0566 253 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lal22g0566 253 MobiDBLite consensus disorder prediction 233 247 - -
Lal22g0566 253 Gene3D - 1 81 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0566 Lal-Chr22 3858890 3861994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0566 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 26.404 1.36e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0566 22 3858890 3861994 Lal22g0566 22 3858890 3861994 ECH
Lal22g0566 22 3858890 3861994 Lal18g0299 18 2462230 2464981 LSH