Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0559 ATGTTAGATCATATGGAGTCTATGTTTGAGGCAGAAACTTATAGCAGCATAACTCCACAAGCATCAGCATCAGCCATGAGAAAAAAGAAAAACAAAAACACAAAGAGGTTCAGTGATGAACAAATCAAATCATTGGAGTCTATGTTTGAGACAGAGTCAAGGCTAGAACCTAGAAAGAAGTTGCAGCTTGCAAGAGAGCTTGGGTTGCAGCCAAGACAAATTGCTATATGGTTTCAGAACAGAAGAGCTAGATGGAAATCAAAGCTACTTGAGAGAGACTACAACATACTTAGATCCAATTATAATAGTTTGGCTTCAAAGTTTGAAGCCCTCAAGAAGGAAAAACAAGCATTATTAGTACAGCTGCAGAATCTGAATGATATAATACAGAAGCCACAAGAGCAAGCTCAAAGTTCTACTTCTACACAAGTTAAACCTGCAAACAGCATGGACAGTGAATCAGAAAATTTAGTCACAATCAAATATGAAGCCGAGGTAAAGCCAAGCACATCAATGGAAAGATCAGAACATGTACTTGGTATTCCCTCAGATGATGATACAAGCATAAAGGTAGAATACTTTGGCATGGAAGATGAACATTGCCTTCTAAATTTTGCTGAACAACATGCTAAAGATTCTTTGACCTCACCAGAAGAATGGAGTACCTTTGAATCTGATGATCTCTTAGCTCAATCAACCAGTGATTTACAATGGTGGGACTTCTGGTCCTGA 732 0.3825 MLDHMESMFEAETYSSITPQASASAMRKKKNKNTKRFSDEQIKSLESMFETESRLEPRKKLQLARELGLQPRQIAIWFQNRRARWKSKLLERDYNILRSNYNSLASKFEALKKEKQALLVQLQNLNDIIQKPQEQAQSSTSTQVKPANSMDSESENLVTIKYEAEVKPSTSMERSEHVLGIPSDDDTSIKVEYFGMEDEHCLLNFAEQHAKDSLTSPEEWSTFESDDLLAQSTSDLQWWDFWS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0559 243 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Lal22g0559 243 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Lal22g0559 243 SMART HOX_1 28 92 IPR001356 GO:0003677
Lal22g0559 243 MobiDBLite consensus disorder prediction 20 39 - -
Lal22g0559 243 Coils Coil 94 128 - -
Lal22g0559 243 Pfam Homeodomain 35 86 IPR001356 GO:0003677
Lal22g0559 243 MobiDBLite consensus disorder prediction 132 154 - -
Lal22g0559 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 243 IPR045224 GO:0003700
Lal22g0559 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 12 243 - -
Lal22g0559 243 CDD homeodomain 37 88 IPR001356 GO:0003677
Lal22g0559 243 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Lal22g0559 243 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Lal22g0559 243 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Lal22g0559 243 Pfam Homeobox associated leucine zipper 88 127 IPR003106 GO:0006355|GO:0043565
Lal22g0559 243 Gene3D - 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0559 Lal-Chr22 3812809 3814709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0559 13 243 Homeobox Transcription Factor Family AT3G61890 49.145 4.19e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal22g0559 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0559 K09338 - gmx:100797862 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0559 22 3812809 3814709 Lal4g0524 4 3794807 3796279 ECH
Lal22g0559 22 3812809 3814709 Lal21g0585 21 4362503 4364931 ECH
Lal22g0559 22 3812809 3814709 Lal22g0559 22 3812809 3814709 ECH
Lal6g0617 6 3981737 3983435 Lal22g0559 22 3812809 3814709 LSH
Lal22g0559 22 3812809 3814709 Lal18g1051 18 13528718 13529878 LSH