Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0557 ATGGAAGATTTGATCCTATCTCCTTCCTCATCCTCTTCCCTTGTTTCACTCTCCAAAGAAAACCCATCAACCCTTCAACAAAAGCTTCAATTTTTAGTAGAGACCCAACCCGATTGGTGGGTCTATGCCATTTTTTGGAAGGCCAAAAACGATGACAAGGGTAGCCTTTACTTATCTTGGGGAGAAGGCCATTTCCAAGGAACAAAAGAAACTTCCCCAAAACAGCAACAACAACAACTACTTTCAAACACGTGCGCAAACAACAAGGACCAAAACGACGCTGAATGGTTCTATATCATGTCGTTGACTCGCACCTTTTCCATTACCAATGCTTCTTCACCTTCATCTTCATCATCCTCTCTACCAGGCAAGTCGTTCGCTTTAGGTTCTGTGCTTTGGTTAAATAACAAGCATGAGCTTCAATACTACAATTGTGAGAGAACAAAAGAGGCTCACATGCATGGAATAGAAACCTTAATTTGCATACCAACAACCAACGGGGTCATCGAATTAGGTTCCTATGACACCATCAAACAAAATTGGGGTATTGTCCAACATGCCAAATCACTCTTTGGATCTTCATCACTATCACCACCAGATCTTATGGACAAGGGCAACAACAACAACAGCAACAATCACCTTAACCCGTCACAAACACAATTCTTTGATGTTCAAAACTTCTCATTCGCCGACATAAGCATATTTGCAGGTGTTCAGCAAAATGAAGACACTACAAAAATAAATACACAAGAACAATCCAACAACAAGAGGAACATTCGATCATCTTATGTTGATTCGGAGAATTCAGATTCCGATAACTGTATAATACTGGCAACGGAAAACACTTCAGAGAAGAAGAAAGATATGTTGTTGCCTAAGAAGAGAGGAAGAAAACCACTTCTCGGGCGTGAAACACCGATGAATCATGTGGAAGCGGAGAGGCAAAGGAGAGAAAAATTGAACCATCGATTCTACTCGTTGAGATCGGTGGTGCCAAATGTTTCAAGAATGGATAAAGCTTCTCTTTTATCTGATGCTGTTGCTTACATCAAGGATCTCAAAACAAAGATCGATGAGTTGGAAAAGGAGCATTGTAGGAATAAGAAGGTGAAGGTTGAAATAGCGGATACAATGGACAATAATAGCACAACAACAACTTCAACTGTAGTGGACCAAAATGGGCCTAATAATCTTGAGGTTGATGTGAAGATTGTAGGGAATGATGCCATAGTGAGGGTTCAATCAGAGAATGTGAACCACCCAGGGGCGAGGCTAATGAGTGTGTTGAGAGACTTGGATTTTCAGGTTCATCATGCTAGCATGTCTTGTGTTAATGATCTTATGCTTCTAGATGTTGTTATTAAAGTTCCTAATATGATGAAAAGTGAAGAGGATCTTAAGTCAGCGATTCTCATGAGATTGAATCACTAG 1431 0.4039 MEDLILSPSSSSSLVSLSKENPSTLQQKLQFLVETQPDWWVYAIFWKAKNDDKGSLYLSWGEGHFQGTKETSPKQQQQQLLSNTCANNKDQNDAEWFYIMSLTRTFSITNASSPSSSSSSLPGKSFALGSVLWLNNKHELQYYNCERTKEAHMHGIETLICIPTTNGVIELGSYDTIKQNWGIVQHAKSLFGSSSLSPPDLMDKGNNNNSNNHLNPSQTQFFDVQNFSFADISIFAGVQQNEDTTKINTQEQSNNKRNIRSSYVDSENSDSDNCIILATENTSEKKKDMLLPKKRGRKPLLGRETPMNHVEAERQRREKLNHRFYSLRSVVPNVSRMDKASLLSDAVAYIKDLKTKIDELEKEHCRNKKVKVEIADTMDNNSTTTTSTVVDQNGPNNLEVDVKIVGNDAIVRVQSENVNHPGARLMSVLRDLDFQVHHASMSCVNDLMLLDVVIKVPNMMKSEEDLKSAILMRLNH 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0557 476 PANTHER TRANSCRIPTION FACTOR BHLH14 1 474 - -
Lal22g0557 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Lal22g0557 476 PANTHER MYC 1 474 IPR045084 GO:0003700|GO:0006355
Lal22g0557 476 MobiDBLite consensus disorder prediction 243 269 - -
Lal22g0557 476 Coils Coil 343 363 - -
Lal22g0557 476 MobiDBLite consensus disorder prediction 195 217 - -
Lal22g0557 476 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 191 IPR025610 -
Lal22g0557 476 Gene3D - 302 369 IPR036638 GO:0046983
Lal22g0557 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 366 IPR036638 GO:0046983
Lal22g0557 476 SMART finulus 310 359 IPR011598 GO:0046983
Lal22g0557 476 Pfam Helix-loop-helix DNA-binding domain 308 353 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0557 Lal-Chr22 3783900 3785330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0557 1 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.923 7.57e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal22g0557 bHLH-MYC_N 3.1e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0557 - K13422 lang:109359482 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0557 22 3783900 3785330 Lal22g0557 22 3783900 3785330 ECH
Lal22g0557 22 3783900 3785330 Lal18g1054 18 13572099 13573520 LSH