Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0553 ATGTCAGAACGTGTGGAAACTGATGAGCGTGTAGACTATGATGAAGAGAACTATATGGAAGAGACAGATGAGGATGTCGAAGAACAAATAGATGGTGATGAAGTGGATGAACACAGTGATGAAGATGTTGAAGGCATTGAAGAGCATGAATATGAGGACTCAGTGGCAGAGGCTGGTGGGAAAGATCAATTACCTGTTGTAGATAGAAGTGATGTTGCTGCTGAGTCTGTAGAACCATCTTTCATTGATGAAGAAGAGAAAAAGAAGCATGATGAACTCCTTGCCCTTCCTCCTCATGGTTCTGAAGTTTTCATTGGCGGGCTTCCCCGGGATGTATGTGAAGATGACTTGAGGGAGTTGTGCGAGCTGATAGGTGATATTCATGAGGTGCGACTGATGAAAGACAGGGACACTGGAGAAGGCAAGGGTTATGCTTTTGTATCTTTTAAAACAAGAGAGGAAGCACAAAAGGCCATTGAAGAGTTGCACAATAAGGAATTTAAGAGTAAAACTTTAAGGTGTTCACTATCGGAGTCAAAACAAAGATTGTTCATTGGCAATGTGCCAAAAAATTGGATTGAAGATGAGTTTAGGAAGGTCATTGAAGGTGTTGGTCCTGGAGTTGAGAACATTGAGCTCAAAAAGGATGCTCAAAATTCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAAATGTCAAGTGCAAGTTTTAAGTTGGATGGTAATACCCCAACTGTCACATGGGCAGATCCAAAGATATCACCTGATCAGTCTGCTTCTTTACAGGTAAAGGCTCTTTATGTGAAAAATATACCTGAGAATACTAGTACTGAAGAACTGAAAGAAGTATTCTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAGAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTAAAGGCTACAAAAGATGGAGAGAAATATGAAATCAATGGCCAAGTTCTTGAGGTTGTTCTTGCTAAGCCTCAAACTGAGAGAAAACCCGATGGAGGTTATGCATATAATCCTGGTTTTCAACCAAACCACTTTCCACAACCTAGTTATGGTGGTGGCTTTGCTGGAAATCTTTATGGCTCTTCAGGAGGTGGATATGGTGTTGCTGCTGGTTTTCAACAGCCAGTGATATATGGTAGGGGTCCAATGCCTTCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATTGGCTATGTCCTTCAACAACCTGGCGTACAGATGCCAGCTCCCCGACCACGCAGAAATGATCGAAACAATGGTCCAAGTGGTCATTCAGGACGTGCAGGCGGTAGTAGCAGTGATGAGGGAAATCGTGGGGGTGGTAGAAGATACCGACCCTATTAG 1440 0.4264 MSERVETDERVDYDEENYMEETDEDVEEQIDGDEVDEHSDEDVEGIEEHEYEDSVAEAGGKDQLPVVDRSDVAAESVEPSFIDEEEKKKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCELIGDIHEVRLMKDRDTGEGKGYAFVSFKTREEAQKAIEELHNKEFKSKTLRCSLSESKQRLFIGNVPKNWIEDEFRKVIEGVGPGVENIELKKDAQNSSKNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKISPDQSASLQVKALYVKNIPENTSTEELKEVFSRHGEVTKVVMPPSRAGGKRDFGFIHYAERSSALKATKDGEKYEINGQVLEVVLAKPQTERKPDGGYAYNPGFQPNHFPQPSYGGGFAGNLYGSSGGGYGVAAGFQQPVIYGRGPMPSGMQMVPMVLPDGQIGYVLQQPGVQMPAPRPRRNDRNNGPSGHSGRAGGSSSDEGNRGGGRRYRPY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0553 479 Gene3D - 266 398 IPR012677 -
Lal22g0553 479 SUPERFAMILY RNA-binding domain, RBD 98 263 IPR035979 GO:0003676
Lal22g0553 479 MobiDBLite consensus disorder prediction 1 67 - -
Lal22g0553 479 Gene3D - 182 262 IPR012677 -
Lal22g0553 479 PANTHER GEO13361P1-RELATED 2 477 - -
Lal22g0553 479 MobiDBLite consensus disorder prediction 9 51 - -
Lal22g0553 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Lal22g0553 479 SUPERFAMILY RNA-binding domain, RBD 272 376 IPR035979 GO:0003676
Lal22g0553 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Lal22g0553 479 Gene3D - 3 181 IPR012677 -
Lal22g0553 479 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lal22g0553 479 SMART rrm1_1 277 349 IPR000504 GO:0003723
Lal22g0553 479 SMART rrm1_1 182 259 IPR000504 GO:0003723
Lal22g0553 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lal22g0553 479 MobiDBLite consensus disorder prediction 436 479 - -
Lal22g0553 479 SMART rrm2_1 102 175 IPR003954 GO:0003676
Lal22g0553 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 249 IPR000504 GO:0003723
Lal22g0553 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lal22g0553 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Lal22g0553 479 CDD RRM_SF 103 175 - -
Lal22g0553 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0553 Lal-Chr22 3756278 3760688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0553 103 421 Eukaryotic Initiation Factors Gene Family AT1G71770 26.359 7.19e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0553 K13161 - gmx:100790907 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0553 22 3756278 3760688 Lal22g0553 22 3756278 3760688 ECH